CB305130

Overview
NameCB305130
Unique NameCB305130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_TRYCR (Eukaryotic translation initiation factor 6 (Fragment) OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.200e-26
Identity = 56/108 (51.85%), Postives = 81/108 (75.00%), Query Frame = -3
Query:  174 FRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE---AQPSALVDEMRKSLID 488
            FR +IA N LVGSY   +N+G +VHP T  +D+DE+++LLQVP+VAGT+NRG+  I +GL VNDW AFCG +TTATE++V+E +F+LR       + L+ ++R +L+D
Sbjct:    4 FRTSIAENALVGSYAVVNNKGCMVHPKTPAQDMDEIASLLQVPVVAGTINRGNAAIGSGLVVNDWAAFCGLNTTATEITVVERIFQLRRDLGGGRANLLQQLRDTLVD 111          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_AERPE (Translation initiation factor 6 OS=Aeropyrum pernix GN=eif6 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.814e-22
Identity = 55/128 (42.97%), Postives = 74/128 (57.81%), Query Frame = -3
Query:  243 VVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 626
            V V  +  R +ALGN I CND   L    L++E  + ++D LGVEV   ++AG   VGS    +NRGGL HP  S E+L  LS + +VP  AGT+N G E +  GL  N + A  G DTT  E++ I+
Sbjct:   98 VEVGIVPTRSNALGNVIVCNDRACLASPGLEKEALKTVSDTLGVEVVEGSVAGVYTVGSAIVVTNRGGLAHPDASEEELKFLSDVFKVPFEAGTINFGVEFVRTGLVANSYGALVGEDTTGPEIARIQ 225          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_METST (Translation initiation factor 6 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=eif6 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.863e-20
Identity = 55/133 (41.35%), Postives = 80/133 (60.15%), Query Frame = -3
Query:  222 VQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 620
            V+ + ++L+A+GN I  ND+ AL +  L  E + +I + L VEV   +IAG  +VGS  + +NRG LVHP  S E+LD +  +L VP   GTVNRG +++ A +  N      G+ TT  EL+ I+ VF L E
Sbjct:   89 VEIMPDKLTAIGNIIVANDNGALVNPSLSDEAKRIIKNTLEVEVVETSIAGLDIVGSLVAATNRGALVHPDASEEELDLVEDVLGVPAEIGTVNRGVKLVGACIIANSNGVIVGNKTTGPELARIDQVFNLFE 221          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_METKA (Translation initiation factor 6 OS=Methanopyrus kandleri GN=eif6 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.165e-19
Identity = 52/133 (39.10%), Postives = 75/133 (56.39%), Query Frame = -3
Query:  228 VVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 626
            V V  +  +++A+GN +  NDH AL H DLD    E+I  VLG  V R  + G   VGS    +++G +VHP  + E+++ +S +L V +  GTVNRGS  +  G+ VN   A  G DTT  EL+ +E    L
Sbjct:   88 VEVDVLPSKMNAVGNLVLTNDHGALVHPDLDDHALEVIESVLGGRVVRGELGGVKTVGSAGVANSKGAVVHPGATEEEMERVSEVLGVDVEVGTVNRGSPYVGVGIVVNSKGAVVGEDTTGPELARLEDALYL 220          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_METBF (Translation initiation factor 6 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.571e-18
Identity = 50/127 (39.37%), Postives = 72/127 (56.69%), Query Frame = -3
Query:  222 RLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 602
            +L+A+GN +  ND  AL H +L  +  E+IA  L VEV+R TIAG   VG     +N+G LVHP  +  +++ L  L ++P+  GT N G++++ +GL  N      GSDTT  EL  IE      E
Sbjct:   93 KLNAVGNIVLANDSAALVHPELSDKAIEVIASTLKVEVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTASEIETLEKLFELPVNIGTTNFGTQMLGSGLLANSKNYLAGSDTTGPELGRIEEALGFLE 219          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_METBU (Translation initiation factor 6 OS=Methanococcoides burtonii (strain DSM 6242) GN=eif6 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.970e-18
Identity = 51/129 (39.53%), Postives = 75/129 (58.14%), Query Frame = -3
Query:  243 QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 629
            +V V+ + + L+A+GN I  ND  AL H ++   + E+I+ VLGV+V R TIAG   VG     +NRG LVHP  + ++L  L  +  +P+  GT N GS+ + +GL  N      GS+TT  EL  +E
Sbjct:   83 EVPVEVLPDMLTAVGNVILANDTAALVHPEMTDSSIEVISRVLGVDVHRGTIAGLGTVGMAGVVTNRGLLVHPMVTPDELSVLEDVFALPIELGTTNYGSQAVGSGLLANSKGYVAGSNTTGHELGRVE 211          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_METMA (Translation initiation factor 6 OS=Methanosarcina mazei GN=eif6 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.330e-17
Identity = 49/130 (37.69%), Postives = 72/130 (55.38%), Query Frame = -3
Query:  222 IEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 611
            + +RL+A+GN +  ND  AL H +L     E+IA  L VEV+R TIAG   VG     +N+G LVHP  ++ + + L  +  +P+  GT N G++++ +GL  N      GS+TT  EL  IE      E
Sbjct:   90 LPDRLNAVGNIVLANDSAALVHPELSDRALEIIARTLKVEVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTVSEREALEEIFGLPVNIGTTNFGTQMLGSGLLANSKNFVAGSETTGPELGRIEEALGFLE 219          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_PYRAE (Translation initiation factor 6 OS=Pyrobaculum aerophilum GN=eif6 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = -3
Query:  237 VQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESV 620
            V  I  + +A+ N I   + VAL    L+    +++ADVLGVEV   TIAGN LVG+    ++RG LV P  + +DL +LS   +V +  GTVNRG   +  G+ VND  A  G +T   EL  ++ V
Sbjct:   91 VDIINTKYTAISNLILAGNKVALVSPLLEPSARKVVADVLGVEVIVDTIAGNPLVGALAVLNSRGLLVAPEATDDDLKKLSEYFKVRVDVGTVNRGKSFLRGGIVVNDNGALVGDETAGPELMRMQQV 218          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_METB6 (Translation initiation factor 6 OS=Methanoregula boonei (strain 6A8) GN=eif6 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17
Identity = 48/128 (37.50%), Postives = 67/128 (52.34%), Query Frame = -3
Query:  222 ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 605
            E ++A GN I  ND  A  H DL  E  E I   LGVEV   T+ G    G     +N+G +VHP  + +++  L T+  +P+  GT+N GS ++  GL VND     G+ T+  EL  +E VF   E
Sbjct:   93 ETMNAAGNVIMANDTFAAVHPDLPAEVAEEIGAFLGVEVIHLTLGGVRTTGMAGVATNKGVIVHPRATAQEIARLETVSGIPVGTGTINMGSGLVGTGLLVNDTGYLAGNATSGFELGRVEDVFGFLE 220          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_HYPBU (Translation initiation factor 6 OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=eif6 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17
Identity = 54/137 (39.42%), Postives = 75/137 (54.74%), Query Frame = -3
Query:  225 DQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNI-LVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLR 632
            D+V ++ +E R +ALGN IA N+  AL    +D+   + I  VLGVE   Q    NI  VGS    +NRGG+VHP  S +++  L+++  V     TVN G   + AGL  ND  A  G +TT  EL  I+   +LR
Sbjct:   88 DKVRLEILEVRQTALGNLIAANNRGALVSPLIDKAILDKIKSVLGVETIYQRHLANIPTVGSMIVVTNRGGVVHPGVSDDEIRILNSVFGVEFTTATVNFGLYFVKAGLVANDHGALVGDETTGPELMRIQQALRLR 224          
The following BLAST results are available for this feature:
BLAST of CB305130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
IF6_TRYCR1.200e-2651.85Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_AERPE6.814e-2242.97Translation initiation factor 6 OS=Aeropyrum perni... [more]
IF6_METST2.863e-2041.35Translation initiation factor 6 OS=Methanosphaera ... [more]
IF6_METKA3.165e-1939.10Translation initiation factor 6 OS=Methanopyrus ka... [more]
IF6_METBF1.571e-1839.37Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_METBU5.970e-1839.53Translation initiation factor 6 OS=Methanococcoide... [more]
IF6_METMA1.330e-1737.69Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_PYRAE2.268e-1739.84Translation initiation factor 6 OS=Pyrobaculum aer... [more]
IF6_METB63.869e-1737.50Translation initiation factor 6 OS=Methanoregula b... [more]
IF6_HYPBU3.869e-1739.42Translation initiation factor 6 OS=Hyperthermus bu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_F03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_F03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305130 ID=CB305130; Name=CB305130; organism=Citrus sinensis; type=EST; length=640bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGAATATGATACTTCTGA
TTGAGATACAAGATTCTGGAAAATAACATACTATCATTAAGGGAAAACAT
CTTCAGAGTTGACAAACACCGCTTCAACTTCATGACAAAAAAGACTGTAA
GCCAAAGTAACTTAAACATAACCGTCAATTAAAGATTTCCTCATCTCGTC
CACAAGGGCACTAGGTTGAGCTTCCCTCAACTTGAAAACACTCTCAATAA
CAGAGAGTTCAGTTGCTGTGGTGTCTGATCCACAGAATGCTGTCCAGTCA
TTCACAGTTAACCCAGCAGCTATGACTTCGCTTCCACGGTTCACAGTCCC
AGCCACCAAAGGTACTTGCAAGAGAGTTGAAAGTTCATCCAAGTCCTCAA
TGGATGTGTGAGGGTGAACCAAGCCTCCTCTGTTGGAGAAGGAACAGTAA
CTGCCAACAAGGATATTACCAGCAATTGTCTGCCTAAAAACTTCTACTCC
AAGAACATCTGCAATCATTTCCTCTGTTTCCCTGTCAAGATCTGTGTGTG
TAAGAGCAACATGGTCGTTGCATGCTATACAGTTGCCCAGGGCAGATAGC
CTCTCTTCAATACGCTGAACGACAACTTGATCAGGTAGGC
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