CB305130

Overview
NameCB305130
Unique NameCB305130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_SULIM (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.626e-15
Identity = 51/127 (40.16%), Postives = 73/127 (57.48%), Query Frame = -3
Query:  243 VQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 620
            V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   92 VEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_SULIK (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eif6 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.626e-15
Identity = 51/127 (40.16%), Postives = 73/127 (57.48%), Query Frame = -3
Query:  243 VQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 620
            V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   92 VEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_SULIA (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.27) GN=eif6 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.626e-15
Identity = 51/127 (40.16%), Postives = 73/127 (57.48%), Query Frame = -3
Query:  243 VQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 620
            V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   92 VEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_PYRHO (Translation initiation factor 6 OS=Pyrococcus horikoshii GN=eif6 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.626e-15
Identity = 49/120 (40.83%), Postives = 64/120 (53.33%), Query Frame = -3
Query:  243 RLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 602
            + +ALGN I  ND  AL      R+  + I ++LGVEV R  IAG   VGS    +N+GGLVHP TS E+L+ LS L +V +  GT N G   +   +  N      G  TT  E+  IE
Sbjct:  102 KYTALGNLILTNDKAALVSAKFSRKEAQEIGEILGVEVERGVIAGLHAVGSAGVVTNKGGLVHPETSDEELEWLSDLFKVDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIE 221          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_PYRAB (Translation initiation factor 6 OS=Pyrococcus abyssi GN=eif6 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.626e-15
Identity = 50/125 (40.00%), Postives = 64/125 (51.20%), Query Frame = -3
Query:  228 RLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 602
            + +ALGN I  ND  AL      R+  + I D+LGVEV R  IAG   VGS    +N+GGLVHP  S E+L+ LS L +V +  GT N G   +   +  N      G  TT  E+  IE    L
Sbjct:  102 KYTALGNLILTNDKAALVSAKFSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGL 226          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_THEVO (Translation initiation factor 6 OS=Thermoplasma volcanium GN=eif6 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.178e-15
Identity = 42/125 (33.60%), Postives = 68/125 (54.40%), Query Frame = -3
Query:  237 IEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESV 611
            ++++++A+GN I  NDH A+ H     +  + I D LGVE  R +I   + VGS    +++G LV+P T  ++L+ L    +V + +GT N GS  + A +  N      G DTT  E+  I+ V
Sbjct:   92 LKDKINAVGNDIIANDHGAIIHKAFSNKARKEIEDTLGVETIRTSIGNILTVGSASVLTSKGMLVNPETDDDELEFLKDFFKVSVKSGTANFGSIYVGASIVANSKGILVGRDTTPIEIDRIDDV 216          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_CENSY (Translation initiation factor 6 OS=Cenarchaeum symbiosum GN=eif6 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.054e-14
Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = -3
Query:  234 IEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 611
            ++ + +ALGN I+ ND   +      RE   +IAD LG+EV ++ IAG   VG+    ++ GG++HP T  ED+  +S ++ V +   T+N G   +++GL  N  +   GS T+  E+ ++   F
Sbjct:   94 LDTKFTALGNMISVNDRGGVVSPVFPREEVRIIADALGIEVIQRRIAGYNQVGAMMVATSGGGIIHPETDGEDVKRISEVMGVHMEPATINGGIPFVSSGLLANKKSVVAGSFTSGPEIMMLTRAF 219          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_PYRKO (Translation initiation factor 6 OS=Pyrococcus kodakaraensis GN=eif6 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.376e-14
Identity = 49/123 (39.84%), Postives = 65/123 (52.85%), Query Frame = -3
Query:  243 EERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGV-EVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 608
            + RL+ALGN I  ND  AL   +  RE    I ++LGV EV R  IA    VGS    +N+GGLVHP  + E+L+ LS L  V +  GT N G   + + +  N +    G  TT  E+  IE
Sbjct:  100 KSRLTALGNLILTNDKAALVSKEFTREEANAIGEILGVDEVERGMIASYRSVGSVGVVTNKGGLVHPEATDEELEWLSDLFGVDIYVGTANMGVPFVGSCMLANSYGVVVGHLTTGPEIVKIE 222          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_THEON (Translation initiation factor 6 OS=Thermococcus onnurineus (strain NA1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.797e-14
Identity = 46/126 (36.51%), Postives = 63/126 (50.00%), Query Frame = -3
Query:  243 VQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 620
            ++  +  L+A GN I  ND  AL      RE  + + D+LGVEV R  I     VGS    +NRGGLVHP  + E+L+ L  L +V +  GT N G   + + +  N      G  TT  E+  IE
Sbjct:   96 IEPFQSTLTAFGNLILANDKAALISVKFTREEAKKLEDILGVEVERGMIGDYHAVGSVGVVTNRGGLVHPEATDEELEWLRDLFKVDIYVGTANMGVPFVGSCMLANSHGVVVGHLTTGPEIVKIE 221          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_METTH (Translation initiation factor 6 OS=Methanobacterium thermoautotrophicum GN=eif6 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.066e-14
Identity = 48/131 (36.64%), Postives = 69/131 (52.67%), Query Frame = -3
Query:  222 RIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 614
            RI ER +A+GN +  ND+ A+    L  +  ++I DVL V+V   T+AG  +VGS  + +NRG L++P  S E++  +   L V    GTVN G  +I A    N      G +TT  EL+ IE      E
Sbjct:   91 RIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLE 221          
The following BLAST results are available for this feature:
BLAST of CB305130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
IF6_SULIM1.626e-1540.16Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIK1.626e-1540.16Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIA1.626e-1540.16Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_PYRHO1.626e-1540.83Translation initiation factor 6 OS=Pyrococcus hori... [more]
IF6_PYRAB1.626e-1540.00Translation initiation factor 6 OS=Pyrococcus abys... [more]
IF6_THEVO6.178e-1533.60Translation initiation factor 6 OS=Thermoplasma vo... [more]
IF6_CENSY1.054e-1432.54Translation initiation factor 6 OS=Cenarchaeum sym... [more]
IF6_PYRKO1.376e-1439.84Translation initiation factor 6 OS=Pyrococcus koda... [more]
IF6_THEON1.797e-1436.51Translation initiation factor 6 OS=Thermococcus on... [more]
IF6_METTH3.066e-1436.64Translation initiation factor 6 OS=Methanobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_F03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_F03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305130 ID=CB305130; Name=CB305130; organism=Citrus sinensis; type=EST; length=640bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGAATATGATACTTCTGA
TTGAGATACAAGATTCTGGAAAATAACATACTATCATTAAGGGAAAACAT
CTTCAGAGTTGACAAACACCGCTTCAACTTCATGACAAAAAAGACTGTAA
GCCAAAGTAACTTAAACATAACCGTCAATTAAAGATTTCCTCATCTCGTC
CACAAGGGCACTAGGTTGAGCTTCCCTCAACTTGAAAACACTCTCAATAA
CAGAGAGTTCAGTTGCTGTGGTGTCTGATCCACAGAATGCTGTCCAGTCA
TTCACAGTTAACCCAGCAGCTATGACTTCGCTTCCACGGTTCACAGTCCC
AGCCACCAAAGGTACTTGCAAGAGAGTTGAAAGTTCATCCAAGTCCTCAA
TGGATGTGTGAGGGTGAACCAAGCCTCCTCTGTTGGAGAAGGAACAGTAA
CTGCCAACAAGGATATTACCAGCAATTGTCTGCCTAAAAACTTCTACTCC
AAGAACATCTGCAATCATTTCCTCTGTTTCCCTGTCAAGATCTGTGTGTG
TAAGAGCAACATGGTCGTTGCATGCTATACAGTTGCCCAGGGCAGATAGC
CTCTCTTCAATACGCTGAACGACAACTTGATCAGGTAGGC
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