CB305130

Overview
NameCB305130
Unique NameCB305130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_METLZ (Translation initiation factor 6 OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=eif6 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.230e-14
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = -3
Query:  234 ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL---QVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 605
            E ++A GN I  ND  A+ H D+     EM+AD L V++   + AG   VG  C+ +N G L+   ++ E++++L   +    V +  G+VN GS +I  GL +N      G+ TT  EL  IE VF
Sbjct:   93 EEMNAAGNVILTNDSFAVVHPDMSSAMREMVADFLKVKIIPMSFAGVGTVGMTCACTNTGVLLPARSTPEEIEKLERSIDDANVAIGTGSVNMGSGLIGTGLLINSKGYLAGNATTGYELGRIEDVF 219          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_SULAC (Translation initiation factor 6 OS=Sulfolobus acidocaldarius GN=eif6 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 50/132 (37.88%), Postives = 70/132 (53.03%), Query Frame = -3
Query:  234 VVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEV-FRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 626
            V V+ ++ R +ALGN I  N H AL + DL       +   L ++   + TIA  I VGS    +++ GLVH   + E+L +LS L +V L +GTVN GS  I +GL  N      GS TT  E+  I+  F
Sbjct:   90 VRVEVVDIRPTALGNIILSNTHGALIYQDLSEAEINKVKKALQIDTAIKGTIANIITVGSVAVITDKAGLVHIDATEEELKKLSELFKVKLDSGTVNFGSVFIRSGLVANRNGVLVGSSTTGAEILRIQRAF 221          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_METMJ (Translation initiation factor 6 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = -3
Query:  222 LSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 599
            ++A GN I  ND VA  H ++  +  E I   L V V R T+ G   VG     +N+G LVHP  +  ++  L  ++ +P+  G+VN GS ++  GL  N      GS TT  EL  IE VF   E
Sbjct:   95 MNAAGNIILANDCVAAVHPEMQIDVAEEIGSFLEVPVVRLTLGGIKTVGMAGFATNKGILVHPRANDTEIANLERIVDLPIGLGSVNMGSGLVGTGLLANSKGYVAGSVTTGFELGRIEEVFGFLE 220          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_PICTO (Translation initiation factor 6 OS=Picrophilus torridus GN=eif6 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.920e-14
Identity = 45/123 (36.59%), Postives = 62/123 (50.41%), Query Frame = -3
Query:  243 IEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 611
            I  +L+A GN I  NDH AL H        + I DVLGVE  + +IAG   VGS    ++RG LV      +++  LS L ++ +  GT N GS  + A +  N      G  TT+ EL  I+
Sbjct:   91 INNKLNAAGNNIIANDHAALIHKSFPDSIRKKIEDVLGVETVKGSIAGIKTVGSVAVLNDRGMLVTSEADEDEIKYLSDLFKINVKTGTANFGSNYVGASIIANSNGILVGEATTSIELGRID 213          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_NITMS (Translation initiation factor 6 OS=Nitrosopumilus maritimus (strain SCM1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.920e-14
Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = -3
Query:  234 IEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 611
            ++ +L+ALGN I  ND  A+    L +E  + I+DVLGVE  ++ IAG    G     +N G  +HP    ED+   S LL V +   ++N G   +++G+  N+     GS TT  E+ ++   F
Sbjct:   94 LDSKLTALGNVICANDKGAVVSPWLSKEDCQTISDVLGVETIQKKIAGFNQTGVVMVANNSGAAIHPEADEEDMKTFSNLLGVKIEQSSINNGIPYVSSGILANNNCIIVGSLTTGPEIMMLTRAF 219          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_HALWD (Translation initiation factor 6 OS=Haloquadratum walsbyi (strain DSM 16790) GN=eif6 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.595e-13
Identity = 47/136 (34.56%), Postives = 64/136 (47.06%), Query Frame = -3
Query:  219 VVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREA 626
            V V  +  R++A GN I  ND+ A  H DL  E  E I   L V V R  +A    VG+    +NRG L HP     +L+ +   L V    GTVN G+ ++ +G+         G DTT  EL+ IE      E+
Sbjct:   87 VSVTELPGRINAAGNVILANDYGAYVHPDLSTEAVESIESALNVPVARGKLADVRTVGTAAVATNRGVLCHPKAREPELEAIEDHLDVRADIGTVNYGAPLVGSGIVAGQTGYVVGEDTTGPELTRIEDTLGYLES 222          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_ARCFU (Translation initiation factor 6 OS=Archaeoglobus fulgidus GN=eif6 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.595e-13
Identity = 37/123 (30.08%), Postives = 67/123 (54.47%), Query Frame = -3
Query:  243 IEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 611
            IE  ++  GN +  ND   + + +++    E +AD + +E+ + T+ G   VG     +NRGGL +P+ +  +  +L  +  V ++ GTVN G++++ +GL  N      G DTT  EL ++E
Sbjct:   88 IETPMTCFGNNLLINDRGGIANPEMESSVVEKVADFMDIELVKGTVGGIKTVGMAAVVTNRGGLANPNINEWEAKKLQEVAGVEVLTGTVNFGTDMVGSGLVANSKGYVVGRDTTGFELGIVE 210          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_METHJ (Translation initiation factor 6 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=eif6 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.390e-13
Identity = 41/130 (31.54%), Postives = 64/130 (49.23%), Query Frame = -3
Query:  222 IEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 611
            +EE ++A GN I  NDH A  H ++D E  + ++D L V V   T+     VG     +N G +V P T+  ++  L  +  +P+  GTV  G+ ++  GL  N +    G  T+  EL  IE +    E
Sbjct:   91 LEEGMNAAGNIILANDHFAAVHPEMDEEFMDALSDFLKVPVIPLTLGDVKTVGMAAVATNSGVVVSPRTTPGEIQRLEQVCSLPVGKGTVTMGNAMVGTGLVANRYGYLAGVGTSGYELGRIEDILGFEE 220          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_UNCMA (Translation initiation factor 6 OS=Uncultured methanogenic archaeon RC-I GN=eif6 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.782e-13
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = -3
Query:  243 VQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 620
            V R++ +++A GN I  ND  AL H  L  +  E I   L VEV R TI G   VG     +N+G LVHP  + E+L  L  L ++P+  GTV+ GS ++ + +         G+ T+  EL  IE
Sbjct:   88 VTRLKGKMTAAGNLILANDTAALVHPALTDKNIEAIEKTLKVEVRRGTIGGLKTVGMAGCATNKGILVHPRATEEELTVLEDLFKLPVDIGTVSFGSPLVGSAILATTKGLITGTRTSGPELGRIE 213          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_HALLT (Translation initiation factor 6 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=eif6 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.863e-13
Identity = 44/126 (34.92%), Postives = 62/126 (49.21%), Query Frame = -3
Query:  243 VQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 620
            V  +   ++A GN +  ND+ A  H DL RE+   I + LGV V R  +     VG+    +N G L HP ++  +L  +   L V    GT+N G+ +I +GL   D     G DTT  EL  IE
Sbjct:   89 VGELPGEINAAGNVVLANDYGAYVHPDLPRESIVTIRETLGVPVVRGDLGDVRTVGTAAVANNTGVLCHPKSTESELQAVEEALDVRADLGTINYGAPLIGSGLIATDEGYVVGEDTTGPELGRIE 214          
The following BLAST results are available for this feature:
BLAST of CB305130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
IF6_METLZ5.230e-1435.43Translation initiation factor 6 OS=Methanocorpuscu... [more]
IF6_SULAC6.830e-1437.88Translation initiation factor 6 OS=Sulfolobus acid... [more]
IF6_METMJ6.830e-1436.51Translation initiation factor 6 OS=Methanoculleus ... [more]
IF6_PICTO8.920e-1436.59Translation initiation factor 6 OS=Picrophilus tor... [more]
IF6_NITMS8.920e-1433.33Translation initiation factor 6 OS=Nitrosopumilus ... [more]
IF6_HALWD2.595e-1334.56Translation initiation factor 6 OS=Haloquadratum w... [more]
IF6_ARCFU2.595e-1330.08Translation initiation factor 6 OS=Archaeoglobus f... [more]
IF6_METHJ3.390e-1331.54Translation initiation factor 6 OS=Methanospirillu... [more]
IF6_UNCMA5.782e-1336.51Translation initiation factor 6 OS=Uncultured meth... [more]
IF6_HALLT9.863e-1334.92Translation initiation factor 6 OS=Halorubrum lacu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_F03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_F03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305130 ID=CB305130; Name=CB305130; organism=Citrus sinensis; type=EST; length=640bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGAATATGATACTTCTGA
TTGAGATACAAGATTCTGGAAAATAACATACTATCATTAAGGGAAAACAT
CTTCAGAGTTGACAAACACCGCTTCAACTTCATGACAAAAAAGACTGTAA
GCCAAAGTAACTTAAACATAACCGTCAATTAAAGATTTCCTCATCTCGTC
CACAAGGGCACTAGGTTGAGCTTCCCTCAACTTGAAAACACTCTCAATAA
CAGAGAGTTCAGTTGCTGTGGTGTCTGATCCACAGAATGCTGTCCAGTCA
TTCACAGTTAACCCAGCAGCTATGACTTCGCTTCCACGGTTCACAGTCCC
AGCCACCAAAGGTACTTGCAAGAGAGTTGAAAGTTCATCCAAGTCCTCAA
TGGATGTGTGAGGGTGAACCAAGCCTCCTCTGTTGGAGAAGGAACAGTAA
CTGCCAACAAGGATATTACCAGCAATTGTCTGCCTAAAAACTTCTACTCC
AAGAACATCTGCAATCATTTCCTCTGTTTCCCTGTCAAGATCTGTGTGTG
TAAGAGCAACATGGTCGTTGCATGCTATACAGTTGCCCAGGGCAGATAGC
CTCTCTTCAATACGCTGAACGACAACTTGATCAGGTAGGC
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