CB305131

Overview
NameCB305131
Unique NameCB305131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length499
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305131 vs. ExPASy Swiss-Prot
Match: YIVG_SCHPO (UPF0195 protein C144.16 OS=Schizosaccharomyces pombe GN=SPAC144.16 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.184e-19
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = -2
Query:  223 ILITFTPTIQHCSMAAVIGFCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSC 465
            I +  TPTI HCSM  +IG C+RV+L+   PP F +D+KV  G+HA E  VNKQLNDKER+AAA EN  L  +++  + +C
Sbjct:   98 ITVHITPTIPHCSMCTLIGLCIRVRLERCLPPRFHVDVKVKKGTHASESQVNKQLNDKERVAAACENEQLLSVLNGMMATC 178          
BLAST of CB305131 vs. ExPASy Swiss-Prot
Match: FA96B_DICDI (UPF0195 protein FAM96B OS=Dictyostelium discoideum GN=fam96B PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.210e-18
Identity = 43/90 (47.78%), Postives = 65/90 (72.22%), Query Frame = -2
Query:  232 ESITVDEKLGRILITFTPTIQHCSMAAVIGFCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALE-NPNLRQLVDECL 498
            E++ ++ +   IL+ FTPT+ HCSMA +IG  ++ KL    P  FK+D+ V PGSH+ E SVNKQLNDKER++AAL+ + ++  +V+EC+
Sbjct:   71 ENVNINLENSYILLYFTPTVPHCSMANLIGLSIKEKLARSLPKRFKVDVIVTPGSHSSESSVNKQLNDKERVSAALDTSSSILTIVNECI 160          
BLAST of CB305131 vs. ExPASy Swiss-Prot
Match: FA96A_DICDI (UPF0195 protein FAM96A OS=Dictyostelium discoideum GN=fam96A PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.597e-18
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = -2
Query:  232 ILITFTPTIQHCSMAAVIGFCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 465
            I I F PT+ HC +A  I  C+R K+KE+ P   K++I +  G+H  E+ +NKQ+NDKERI AALENP + QLV +C+
Sbjct:   68 IKILFQPTVPHCHLAPTIALCIREKIKEYLPKRSKIEIYIKKGTHQTEDEINKQINDKERIIAALENPEIFQLVKKCI 145          
BLAST of CB305131 vs. ExPASy Swiss-Prot
Match: YHS2_YEAST (UPF0195 protein YHR122W OS=Saccharomyces cerevisiae GN=YHR122W PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.282e-17
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = -2
Query:  220 KLGRILITFTPTIQHCSMAAVIGFCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCE 477
            ++  ++I  TPTI HCS+A +IG  +RV+L+   PP F++ I +  G+H  E  VNKQLNDKER+AAA EN  L  +V + L +C+
Sbjct:  146 EMAEVVIKITPTITHCSLATLIGLGIRVRLERSLPPRFRITILLKKGTHDSENQVNKQLNDKERVAAACENEQLLGVVSKMLVTCK 231          
The following BLAST results are available for this feature:
BLAST of CB305131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
YIVG_SCHPO3.184e-1951.85UPF0195 protein C144.16 OS=Schizosaccharomyces pom... [more]
FA96B_DICDI1.210e-1847.78UPF0195 protein FAM96B OS=Dictyostelium discoideum... [more]
FA96A_DICDI4.597e-1850.00UPF0195 protein FAM96A OS=Dictyostelium discoideum... [more]
YHS2_YEAST2.282e-1746.51UPF0195 protein YHR122W OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305131 ID=CB305131; Name=CB305131; organism=Citrus sinensis; type=EST; length=499bp
TTTTTTTTTTTTTTTNNTTTTTTTTTTTTTGGCGTCTGTAAAAGGATTCA
TAAATTGATCAATAAGCCAACAAAAATGGAGGAGGCACACAACAGAGGGA
CAGTAAAGTCATTACATCAAATTCATTTTACAACAACATTTCTTATTACA
TACACCCCAATACTGCTGCTGTTTACTCTGTACAGTGATTTTTGCTCAGT
TGAGTGCACTTGCTCAAATTTCACAGGAATAAAGACACTCATCAACAAGT
TGGCGAAGGTTAGGATTCTCCAAAGCAGCTGCAATTCTTTCTTTATCATT
CAACTGCTTATTAACTGATTCTTCATCAGCATGGGATCCAGGAGCAACTT
TGATGTCAAGCTTGAAATGCGGAGGGAAAAATTCTTTCAGTTTAACCCTC
AAGCAGAAACCAATCACCGCCGCCATACTGCAATGCTGAATAGTGGGAGT
GAAAGTTATCAAAATACGCCCAAGCTTCTCGTCAACAGTGATCGATTCC
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