CB305139

Overview
NameCB305139
Unique NameCB305139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10229 contig Csv1_Contig10229:669..931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305139 vs. ExPASy Swiss-Prot
Match: PSBP_BRAJU (Oxygen-evolving enhancer protein 2, chloroplastic (Fragment) OS=Brassica juncea GN=PSBP PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.592e-19
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = -1
Query:  112 ADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 264
            AD DEGGKHQLITATV GGKLYICKAQAGDKRWFKGA K+VE  A+SFSVA
Sbjct:  167 ADEDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 217          
BLAST of CB305139 vs. ExPASy Swiss-Prot
Match: PSBP3_TOBAC (Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.592e-19
Identity = 42/51 (82.35%), Postives = 49/51 (96.08%), Query Frame = -1
Query:  112 ADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 264
            ADG+EGGKHQL+TATV  GKLYICKAQAGDKRWFKGA+K+VE+TA+SFS+A
Sbjct:  216 ADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 266          
BLAST of CB305139 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.385e-19
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = -1
Query:  112 ADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 264
            ADGDEGGKH LITATV  GKLYICKAQAGDKRWFKGA+K+VES ASSFS A
Sbjct:  215 ADGDEGGKHLLITATVSDGKLYICKAQAGDKRWFKGAKKFVESAASSFSAA 265          
BLAST of CB305139 vs. ExPASy Swiss-Prot
Match: PSBP_FRIAG (Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.194e-18
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = -1
Query:  112 ADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 264
            ADGDEGGKH +I+ATV  GKLYICKAQAGDKRWFKGA+K+VEST +SF+VA
Sbjct:  214 ADGDEGGKHHVISATVTDGKLYICKAQAGDKRWFKGAKKFVESTTTSFNVA 264          
BLAST of CB305139 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.218e-17
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = -1
Query:  112 ADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 264
            ADGDEGGKHQLITATV  GKLY+CKAQ  DKRWFKGA+K+VE+ A SFSVA
Sbjct:  209 ADGDEGGKHQLITATVADGKLYVCKAQR-DKRWFKGAKKFVENAAGSFSVA 258          
The following BLAST results are available for this feature:
BLAST of CB305139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSBP_BRAJU2.592e-1986.27Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP3_TOBAC2.592e-1982.35Oxygen-evolving enhancer protein 2-3, chloroplasti... [more]
PSBP_NARPS3.385e-1986.27Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_FRIAG2.194e-1880.39Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_WHEAT9.218e-1780.39Oxygen-evolving enhancer protein 2, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_G01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_G01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305139 ID=CB305139; Name=CB305139; organism=Citrus sinensis; type=EST; length=264bp
TTTTTTTTTTTTTTGTTTTTTTTTTTTTTTGGGGAAAGATGGGAGTAGAT
AATTCAAGACAAACAGCATACATTAAGTTGGATTTACATAAAAATTCTGA
TTAATGTCTCAAGCAACACTGAAAGAACTGGCAGTGCTTTCCACATACTT
TCTTGCTCCCTTAAACCACCTCTTGTCTCCAGCTTGTGCCTTGCAGATGT
AAAGCTTGCCACCTTTAACCGTGGCTGTAATTAGTTGATGCTTGCCACCT
TCATCTCCATCAGC
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