CB305141

Overview
NameCB305141
Unique NameCB305141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:398..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305141 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.245e-15
Identity = 61/143 (42.66%), Postives = 78/143 (54.55%), Query Frame = -2
Query:  237 KELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDTFFHALE--CEPPLQIGYQPAD-PISVVTAGPSLNNYMQGWLP 635
            KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++             L E  Q++       A   GY       ++   P  G+ FFH+LE   EP LQIG+ P     S VTA      +M  WLP
Sbjct:  125 KELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRK-------------LEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTPEQMNNSCVTA------FMPTWLP 248          
BLAST of CB305141 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = -2
Query:  240 ELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQP--QGDTFFHALECEPPLQI----GYQPADPISVVTAGPSLNNYMQGWL 632
            ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L+++   L  +D A  Q   G      Q     +  G     + P  Q   FF  L+    LQ+     + PA+  +  T   ++N +  GW+
Sbjct:  124 ELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRK---LEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANATNSATTSQNVNGFFPGWM 257          
BLAST of CB305141 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 45/137 (32.85%), Postives = 68/137 (49.64%), Query Frame = -2
Query:  243 KELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPPLQIGY------QPADPISVVTAGPSLNNYMQGW 635
            KEL+ LE+QL+ SL Q R  +TQ M++ + +L+ KE+ L E NK LK +      +      + + +   T+         G  +  AQP  D     ++CEP LQIGY      + A+P S    G   NN++ GW
Sbjct:  123 KELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSNCRSAIQDSWVHGTVV-------SGGRVLNAQPPPD-----IDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGW 247          
The following BLAST results are available for this feature:
BLAST of CB305141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MADS8_ORYSJ1.245e-1542.66MADS-box transcription factor 8 OS=Oryza sativa su... [more]
AGL3_ARATH2.429e-1133.58Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MAD17_ORYSJ7.068e-1132.85MADS-box transcription factor 17 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_G05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_G05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305141 ID=CB305141; Name=CB305141; organism=Citrus sinensis; type=EST; length=639bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAAAATACACGCACACAC
AACATAGCTATATATCGTCATCAGTTTCCCTAAAGGGCAGGATCACTGTA
AAGTTATTATAATAAATCCTTATGATTGCGTGTTCCTAGTCACTGAATAG
GGTTGCTTACAAAGGGATACAAAGTTGCTGATTCTTATGGATCAACTGCA
ATACATTGACTGGTAATGCCCGCCGCTCTCTTAGCATGGTAGCCATCCTT
GCATGTAATTATTCAAACTCGGGCCTGCTGTGACAACCGATATTGGGTCC
GCAGGCTGGTATCCAATTTGCAATGGGGGTTCACATTCCAAGGCGTGAAA
GAAGGTATCGCCCTGAGGTTGAGCTGGTTTAAGCCCATAACCACAATCTT
CTGCACTAGGATTCAATTGAAGTGTGTTCACTTGGTATCCCTCCATCAAC
TGCAAACCAGCAAAATCGGCGTGCCTTAGCGTCATCGTCCTTTGTTTGAG
GGTCTTATTTGCTTCGCTCAGCAACTGTTCCTTATGTTGCAGTTCAGTAA
GGGTATCCAGCATGTACTGAGTTCTTGTTGATCTGATCTGCTTCAATGAC
ATATCAAGCTGCCTTTCAAGTGACTCAAGCTCTTTGCTG
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