CB305155

Overview
NameCB305155
Unique NameCB305155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1709 contig Csv1_Contig1709:6..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_METTP (30S ribosomal protein S8P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps8p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.598e-30
Identity = 60/124 (48.39%), Postives = 87/124 (70.16%), Query Frame = -2
Query:  196 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 567
            L DA+ ++ NAE  GK + +I+P+SK+I   L VM   GYIGEFE++DD ++G   V+L GR+N+CGVI PRF + V E+E W  R LP+R FG ++L+TS G+M H +AR + +GG +L + Y
Sbjct:    6 LADAMSTIKNAENVGKPECIIKPASKLIAMTLKVMADLGYIGEFEFIDDGKSGMFKVKLLGRINRCGVIKPRFAIKVAELEKWERRFLPARNFGVLILSTSQGVMPHTDARARGIGGHLLAYVY 129          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_THEON (30S ribosomal protein S8P OS=Thermococcus onnurineus (strain NA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.550e-30
Identity = 60/130 (46.15%), Postives = 92/130 (70.77%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M  +  L +AL  + N+E+ GK++V I+P+SK+I + L VMQ++GYIGEFE++DD RAG   V+L G++NK G I PRF V  +E E W  R LP+ +FG ++++TS G+M H+EA  K +GG+++ + Y
Sbjct:    1 MTLLDPLANALSHITNSERVGKKEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAREYEAWEKRFLPAFEFGILIVSTSQGVMTHKEAIEKGIGGRLIAYVY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_HYPBU (30S ribosomal protein S8P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps8p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.247e-29
Identity = 64/133 (48.12%), Postives = 89/133 (66.92%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEI---EGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV +  L +A+ ++ NAE R K +V+I P+SK+I   L VMQ+ GYIGEFEY+DD R GKI V L GR+NK GVI PRF V  K++     W  + LPSR  G ++++TS G+M H EA ++ +GG +L + Y
Sbjct:    1 MVMLDTLANAMAAIVNAEMRAKPEVIIMPASKLIANVLRVMQREGYIGEFEYIDDGRWGKIRVRLLGRINKAGVIKPRFSVKYKDLIRMPDWLRKYLPSRDIGILIISTSQGVMSHREAIQRRIGGVLLAYVY 133          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_METMJ (30S ribosomal protein S8P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.629e-29
Identity = 55/130 (42.31%), Postives = 94/130 (72.31%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M R++ + DA+ ++ NA   GK +V++ P+SK++   L VMQ++G+I  FE++DD R G+  V+L+G +NKCG ISPRF V + ++E W ++ LP++ FG ++++TS G++ H EAR + +GG++LG+ Y
Sbjct:    1 MARLNPIADAMSTIKNAGDAGKGEVIVEPASKLLGAMLRVMQENGFISGFEFIDDGRGGQFRVQLSGTINKCGAISPRFPVAMADMEYWESQYLPAKNFGILIVSTSKGVISHAEARNEGIGGQLLGYVY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_KORCO (30S ribosomal protein S8P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps8p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.127e-29
Identity = 62/130 (47.69%), Postives = 86/130 (66.15%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M R+  L DA+ ++ N    GKR+V+I  +SK+I K L V+++HGYI EFEYVDD R GK VV LNGR+NK GVI PRF V V E   W    LP+   G I+++T+ G+M H EA+ + +GG ++ + Y
Sbjct:    1 MTRLDPLADAMSTLTNGSMLGKREVVINIASKLIGKVLKVLKEHGYIDEFEYVDDGRFGKYVVRLNGRINKAGVIKPRFPVKVGEFSRWEKIYLPAENVGLIIVSTNQGVMTHREAKERGIGGVLIAYCY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_METLZ (30S ribosomal protein S8P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps8p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.779e-29
Identity = 59/130 (45.38%), Postives = 89/130 (68.46%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M + + + DA+ ++ NA   GK  V + P+S++    L VMQ++GYI  FE +DD R G+  + L+G +NKCGVI+PRF V V+++E W  R LP + FG I+LTTS G+M HE+AR+  VGG++LG+ +
Sbjct:    1 MTKQNPIADAMSAIKNAGDTGKLAVTVEPASRLFGDMLKVMQEYGYITGFEKIDDGRGGQFQIALSGGINKCGVITPRFSVKVEDLESWEIRYLPGKGFGIIILTTSKGVMSHEQARKLGVGGELLGYVF 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_METBF (30S ribosomal protein S8P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps8p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.779e-29
Identity = 63/130 (48.46%), Postives = 86/130 (66.15%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV +  L +AL ++ NAE  GK   +IRP+SK I   L VMQ  GYIGEFE++DD +AG   V L GR+NKCG I PR+ VG    E W  + LP++ FG +++TTS+G+M   EAR K +GG++L + Y
Sbjct:    1 MVLLDPLANALSTIKNAEAIGKSSCIIRPASKNIGNVLKVMQDLGYIGEFEFIDDGKAGIYSVTLVGRVNKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALIITTSSGVMSQYEAREKKIGGQLLAYVY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_METB6 (30S ribosomal protein S8P OS=Methanoregula boonei (strain 6A8) GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.739e-29
Identity = 56/130 (43.08%), Postives = 88/130 (67.69%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M R++ + D + ++ NA   GK +V I P+SK++   L +MQ  GYI  FE+++D R G++ V L G++NKCG I PRF V + E+E W  + LP + FG ++L+TS G+M H +ARR+ +GG++LG+ Y
Sbjct:    1 MTRLNTIADGMSALKNAGDTGKSEVTIEPASKLLGAMLRIMQDAGYIAGFEFIEDGRGGQLKVHLTGKINKCGAICPRFSVQLDEMEYWEKQYLPGKNFGLMILSTSHGVMSHVQARREGIGGELLGYVY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_PYRIL (30S ribosomal protein S8P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.190e-29
Identity = 60/130 (46.15%), Postives = 90/130 (69.23%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV + +L++AL  + NAE  GK+QV+I P +K+I   L V+Q++GY+GE EY+DD R GK VV+L G++N  G I PR+ V  +EI  W  + LP+RQ G +V++TS G+M H EA+ + +GG +L + Y
Sbjct:    1 MVMLDLLSNALIQIKNAEIMGKKQVVIWPVNKLIYHTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILVISTSQGVMSHIEAKERKIGGVLLAYVY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_METMA (30S ribosomal protein S8P OS=Methanosarcina mazei GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.190e-29
Identity = 62/130 (47.69%), Postives = 86/130 (66.15%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV +  L +AL ++ NAE  GK   ++RP+SK I   L VMQ  GYIG+FE++DD +AG   V L GR+NKCG I PR+ VG    E W  + LP++ FG ++LTTS+G+M   EAR K +GG++L + Y
Sbjct:    1 MVLLDPLANALSTIKNAEAIGKSSCIVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGIYSVTLVGRINKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALILTTSSGVMSQYEARDKKIGGQLLAYVY 130          
The following BLAST results are available for this feature:
BLAST of CB305155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_METTP5.598e-3048.3930S ribosomal protein S8P OS=Methanosaeta thermoph... [more]
RS8_THEON9.550e-3046.1530S ribosomal protein S8P OS=Thermococcus onnurine... [more]
RS8_HYPBU1.247e-2948.1230S ribosomal protein S8P OS=Hyperthermus butylicu... [more]
RS8_METMJ1.629e-2942.3130S ribosomal protein S8P OS=Methanoculleus marisn... [more]
RS8_KORCO2.127e-2947.6930S ribosomal protein S8P OS=Korarchaeum cryptofil... [more]
RS8_METLZ2.779e-2945.3830S ribosomal protein S8P OS=Methanocorpusculum la... [more]
RS8_METBF2.779e-2948.4630S ribosomal protein S8P OS=Methanosarcina barker... [more]
RS8_METB64.739e-2943.0830S ribosomal protein S8P OS=Methanoregula boonei ... [more]
RS8_PYRIL6.190e-2946.1530S ribosomal protein S8P OS=Pyrobaculum islandicu... [more]
RS8_METMA6.190e-2947.6930S ribosomal protein S8P OS=Methanosarcina mazei ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_A01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305155 ID=CB305155; Name=CB305155; organism=Citrus sinensis; type=EST; length=664bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTAACACATAATATCATCT
TTCTTCAACTAAAAGGTACCAATCCGAGTTTAAAAATGCATAATTAAATC
AAGTAAAACAAAGAGAAGCTAATCCATTTGCGAACAAGTTCTTCCAAAGT
ACACAAACAAAACTCAAGTCCCATTCTCAATATGAACTTTGCCTAGTAGA
AAAAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCCTCTTCGTGG
TCCATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAACTGTCTTGA
GGGAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGCCAACATCAA
AACGGGGACTGATAACCCCACATTTGTTCAATCTTCCGTTCAGTTCAACC
ACAATCTTACCAGCTCTGTGGTCATCAACATACTCAAACTCACCAATGTA
CCCGTGCTTTTGCATCACCAGAAGAAACTTAATGATAACCTTGGAGGATG
GTCTGATCATAACCTGACGCTTCCCCCTTTTCTCGGCATTATACATGCTC
TTAAGAGCGTCATTCAGAACACTAACTCTCACCATTGTTGCGTAGGCAAA
TCAAAGCAGGGAGAGGCGCCTCTGAAAGAGTACGTGAGCTGCAAAAGCTA
GGGTTTTGGAGCCC
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