CB305155

Overview
NameCB305155
Unique NameCB305155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1709 contig Csv1_Contig1709:6..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_METM5 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps8p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.208e-24
Identity = 52/124 (41.94%), Postives = 81/124 (65.32%), Query Frame = -2
Query:  196 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 567
            L +AL  + N E  GK    ++P+SK+I + L VMQ  GYIG FEY++D +AG   V+L G++NKCG + PR+ V   + E +  R LP++ FG ++++T  G+M H+EAR   VGG+++ + Y
Sbjct:    7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRLISYIY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_HALSA (30S ribosomal protein S8P OS=Halobacterium salinarium GN=rps8p PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.208e-24
Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = -2
Query:  196 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 567
            L+DAL  + NAE  G     + P+S ++   L V    GYI  FE+VD+ +AG+  VEL G +N+CG ++PR+ VG    E W  R LP+R +G +V+TTS GIM H EAR   +GG+V+ + Y
Sbjct:    7 LSDALSGIDNAESVGHLTHTVAPASNMVGSVLEVFYDRGYIDGFEFVDNGKAGRFEVELKGAINECGPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYEAREAGIGGQVIAYVY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_HALS3 (30S ribosomal protein S8P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.208e-24
Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = -2
Query:  196 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 567
            L+DAL  + NAE  G     + P+S ++   L V    GYI  FE+VD+ +AG+  VEL G +N+CG ++PR+ VG    E W  R LP+R +G +V+TTS GIM H EAR   +GG+V+ + Y
Sbjct:    7 LSDALSGIDNAESVGHLTHTVAPASNMVGSVLEVFYDRGYIDGFEFVDNGKAGRFEVELKGAINECGPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYEAREAGIGGQVIAYVY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_HALMA (30S ribosomal protein S8P OS=Haloarcula marismortui GN=rps8p PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.208e-24
Identity = 54/122 (44.26%), Postives = 75/122 (61.48%), Query Frame = -2
Query:  196 DALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 561
            +AL ++ NAE  G  +  + P+S  I   L V    GYI  F +VDD +AG+  VEL G +N+CG + PR+  G  E E W  R LP+R +G +V+TTS GIM H EAR + VGG+V+ + Y
Sbjct:    9 NALSALNNAESVGHLEQTVSPASNEIGSVLEVFYDRGYIDGFSFVDDGKAGEFEVELKGAINECGPVKPRYSAGADEFEKWEKRFLPARDYGTLVVTTSHGIMSHYEAREQGVGGQVIAYVY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_AERPE (30S ribosomal protein S8P OS=Aeropyrum pernix GN=rps8p PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.691e-24
Identity = 57/133 (42.86%), Postives = 83/133 (62.41%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARL---LPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV +  L +A+ ++ NAE RGK + +I PSSK+I   L +++K GYIG FEY+DD R GK  V+L GR+N  GV+ PR  V  +E+      L   L SR  G ++L+T  G+M H EA ++ +GG V+ + Y
Sbjct:    1 MVMLDTLANAMAAIKNAEMRGKGEAIIMPSSKLIANVLRILEKEGYIGGFEYIDDGRWGKFRVKLLGRINDIGVVKPRTPVSYRELAKMPEHLRKYLASRDVGLLILSTPQGVMTHREALKRKIGGIVIAYVY 133          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_META3 (30S ribosomal protein S8P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps8p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.590e-24
Identity = 50/124 (40.32%), Postives = 80/124 (64.52%), Query Frame = -2
Query:  196 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 567
            L +AL  + N E+ GK    ++P+SK+I +   VMQ  GY+G FEY++D +AG   VEL G +NKCG + PR+ V   E E +  R LP++ FG ++++T  G+M H+EA+   +GG+++ + Y
Sbjct:    7 LANALNHLSNCERVGKDVAYVQPASKLIGRVFKVMQDKGYMGNFEYIEDGKAGIYKVELTGHINKCGAVRPRYAVKKTEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKSNGLGGRLISYIY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_CENSY (30S ribosomal protein S8P OS=Cenarchaeum symbiosum GN=rps8p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.336e-23
Identity = 52/130 (40.00%), Postives = 79/130 (60.77%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M   ++L +   ++YN E R +    + P+SK+ ++ L  ++K GYIGEFE+V+D R GK  V L  ++ KCG ISPRF V   E   W  + LPS   G +V+TT+ G+M H EA  + +GG ++G+ Y
Sbjct:    1 MPATNILANLFVTLYNTEARRRGDCQVYPTSKLGVEVLGTLKKAGYIGEFEHVEDSRGGKFSVHLLAKITKCGAISPRFKVKKGEYTFWEQQYLPSYDRGMLVVTTNQGVMSHHEAAERGIGGFLIGYVY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_NANEQ (30S ribosomal protein S8P OS=Nanoarchaeum equitans GN=rps8p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 41/125 (32.80%), Postives = 72/125 (57.60%), Query Frame = -2
Query:  196 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 570
            ++ D L  + N  ++G+ +    P S +IIK + +M++ GYI  +  VD  R   I +EL+   N+   I PRF V   E+E +  R LP+  FG ++L+TS G++ + EA+ + +GG ++ + Y
Sbjct:    5 IVADFLSHLTNVRRKGEDKTAFFPVSNLIIKLVEIMKREGYIKNYRLVDSSRGKIIEIELSEYFNEANAIKPRFPVEYSELEKYEKRYLPALNFGRLILSTSKGLITNREAKEQKIGGVLIAYVY 129          
The following BLAST results are available for this feature:
BLAST of CB305155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_METM51.208e-2441.9430S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_HALSA1.208e-2443.5530S ribosomal protein S8P OS=Halobacterium salinar... [more]
RS8_HALS31.208e-2443.5530S ribosomal protein S8P OS=Halobacterium salinar... [more]
RS8_HALMA1.208e-2444.2630S ribosomal protein S8P OS=Haloarcula marismortu... [more]
RS8_AERPE2.691e-2442.8630S ribosomal protein S8P OS=Aeropyrum pernix GN=r... [more]
RS8_META34.590e-2440.3230S ribosomal protein S8P OS=Methanococcus aeolicu... [more]
RS8_CENSY1.336e-2340.0030S ribosomal protein S8P OS=Cenarchaeum symbiosum... [more]
RS8_NANEQ4.162e-1732.8030S ribosomal protein S8P OS=Nanoarchaeum equitans... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_A01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305155 ID=CB305155; Name=CB305155; organism=Citrus sinensis; type=EST; length=664bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTAACACATAATATCATCT
TTCTTCAACTAAAAGGTACCAATCCGAGTTTAAAAATGCATAATTAAATC
AAGTAAAACAAAGAGAAGCTAATCCATTTGCGAACAAGTTCTTCCAAAGT
ACACAAACAAAACTCAAGTCCCATTCTCAATATGAACTTTGCCTAGTAGA
AAAAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCCTCTTCGTGG
TCCATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAACTGTCTTGA
GGGAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGCCAACATCAA
AACGGGGACTGATAACCCCACATTTGTTCAATCTTCCGTTCAGTTCAACC
ACAATCTTACCAGCTCTGTGGTCATCAACATACTCAAACTCACCAATGTA
CCCGTGCTTTTGCATCACCAGAAGAAACTTAATGATAACCTTGGAGGATG
GTCTGATCATAACCTGACGCTTCCCCCTTTTCTCGGCATTATACATGCTC
TTAAGAGCGTCATTCAGAACACTAACTCTCACCATTGTTGCGTAGGCAAA
TCAAAGCAGGGAGAGGCGCCTCTGAAAGAGTACGTGAGCTGCAAAAGCTA
GGGTTTTGGAGCCC
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