CB322092

Overview
NameCB322092
Unique NameCB322092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFA_ORYSJ (Auxin response factor 1 OS=Oryza sativa subsp. japonica GN=ARF1 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.943e-51
Identity = 91/134 (67.91%), Postives = 114/134 (85.07%), Query Frame = 2
Query:    2 LRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 403
            LRRHA+ECLPPLDMS   PTQEL  KDLHG+EWRF+HI+RGQPRRHLL +GWS FV+SK+L++GDAF++LR E GE RVGVRR +++Q  +P+SVISS SMHLGVLA+A HA+ T ++F VYY+PR S S++IV
Sbjct:  140 LRRHANECLPPLDMSMATPTQELITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLISGDAFVYLRSETGEQRVGVRRLVQKQSTMPASVISSQSMHLGVLASASHAIKTNSIFLVYYRPRLSQSQYIV 273          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 5.652e-51
Identity = 96/134 (71.64%), Postives = 113/134 (84.33%), Query Frame = 2
Query:    2 LRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 403
            LR+HA ECLP LDM++  PTQEL A+DLHG EWRF+HIFRGQPRRHLL +GWS FV+SKRLVAGDAF+FLRGE G+LRVGVRR  +QQ  +P+SVISS SM LGVLATA HAV+T T+F V+YKPR   S+FI+
Sbjct:  163 LRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTTIFVVFYKPRI--SQFII 294          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.010e-48
Identity = 86/134 (64.18%), Postives = 110/134 (82.09%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406
            RR A++  PPLD ++QPP QEL AKDLHGNEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+  +N +L +G+RRA R Q  +PSSV+SS SMH+G+LA A HA ST + FT++Y PR SPSEF++P
Sbjct:  153 RRAAEKVFPPLDFTQQPPAQELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDNNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIP 286          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.010e-48
Identity = 86/134 (64.18%), Postives = 110/134 (82.09%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406
            RR A++  PPLD ++QPP QEL AKDLHGNEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+  +N +L +G+RRA R Q  +PSSV+SS SMH+G+LA A HA ST + FT++Y PR SPSEF++P
Sbjct:  153 RRAAEKVFPPLDFTQQPPAQELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDNNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIP 286          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.429e-48
Identity = 86/134 (64.18%), Postives = 110/134 (82.09%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406
            RR A++  PPLD S+QPP QEL A+DLH NEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ IF+  +N +L +G+RRA RQQ  +PSSV+SS SMH+G+LA A HA +T + FT++Y PR SPSEF++P
Sbjct:  151 RRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNDNNQLLLGIRRANRQQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIP 284          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 7.639e-48
Identity = 85/134 (63.43%), Postives = 110/134 (82.09%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406
            RR A++  PPLD ++QPP QEL AKDLHGNEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+  ++ +L +G+RRA R Q  +PSSV+SS SMH+G+LA A HA ST + FT++Y PR SPSEF++P
Sbjct:  153 RRAAEKVFPPLDFTQQPPAQELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDSNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIP 286          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 7.639e-48
Identity = 85/134 (63.43%), Postives = 110/134 (82.09%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406
            RR A++  PPLD ++QPP QEL AKDLHGNEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+  ++ +L +G+RRA R Q  +PSSV+SS SMH+G+LA A HA ST + FT++Y PR SPSEF++P
Sbjct:  153 RRAAEKVFPPLDFTQQPPAQELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDSNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIP 286          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFF_ARATH (Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.103e-46
Identity = 84/134 (62.69%), Postives = 108/134 (80.60%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406
            RR A++  PPLD S+QPP QEL A+DLH NEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+  +  +L +G+RRA R Q  +PSSV+SS SMHLG+LA A HA +T + FT++Y PR SPSEF++P
Sbjct:  148 RRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIP 281          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFV_ARATH (Auxin response factor 22 OS=Arabidopsis thaliana GN=ARF22 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 1.220e-45
Identity = 86/137 (62.77%), Postives = 106/137 (77.37%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQ 415
            ++HA ECLPPLDMS+  PTQEL A DLHGN+WRF H +RG P+RHLL +GW+ F +SK+LVAGD  +F+RGE GELRVG+RRA  QQGN+PSS+IS  SM  GV+A+A HA     MF V YKPR+  S+FIV YD+
Sbjct:  143 KKHAIECLPPLDMSQPLPTQELLATDLHGNQWRFNHNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIISIESMRHGVIASAKHAFDNQCMFIVVYKPRS--SQFIVSYDK 277          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.717e-45
Identity = 81/134 (60.45%), Postives = 106/134 (79.10%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406
            RR A+   PPLD ++QPP QEL A+D+H  EW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+  E  +L +G+RRA R Q  +PSSV+SS SMH+G+LA A HA +T + FT++Y PR SPSEF++P
Sbjct:  154 RRAAERVFPPLDFTQQPPAQELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIP 287          
The following BLAST results are available for this feature:
BLAST of CB322092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ARFA_ORYSJ1.943e-5167.91Auxin response factor 1 OS=Oryza sativa subsp. jap... [more]
ARFK_ARATH5.652e-5171.64Auxin response factor 11 OS=Arabidopsis thaliana G... [more]
ARFQ_ORYSJ2.010e-4864.18Auxin response factor 17 OS=Oryza sativa subsp. ja... [more]
ARFQ_ORYSI2.010e-4864.18Auxin response factor 17 OS=Oryza sativa subsp. in... [more]
ARFY_ORYSJ3.429e-4864.18Auxin response factor 25 OS=Oryza sativa subsp. ja... [more]
ARFF_ORYSJ7.639e-4863.43Auxin response factor 6 OS=Oryza sativa subsp. jap... [more]
ARFF_ORYSI7.639e-4863.43Auxin response factor 6 OS=Oryza sativa subsp. ind... [more]
ARFF_ARATH1.103e-4662.69Auxin response factor 6 OS=Arabidopsis thaliana GN... [more]
ARFV_ARATH1.220e-4562.77Auxin response factor 22 OS=Arabidopsis thaliana G... [more]
ARFL_ORYSJ2.717e-4560.45Auxin response factor 12 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionEST0200 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB016 similar to auxin response factor-like protein (acc# BAB10162), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322092 ID=CB322092; Name=CB322092; organism=Citrus sinensis; type=EST; length=415bp
ACTGAGACGGCATGCTGATGAGTGTCTTCCACCCTTGGACATGTCACGGC
AGCCTCCCACACAGGAGTTGGCTGCTAAGGATTTGCATGGAAATGAGTGG
CGGTTCCGGCATATTTTCAGGGGTCAACCACGTAGACACTTGCTTCAGAG
TGGATGGAGTGTTTTTGTTAGCTCAAAAAGACTAGTTGCAGGGGATGCTT
TTATATTTTTGAGGGGTGAGAATGGCGAACTTCGTGTTGGTGTAAGGCGA
GCAATGAGGCAGCAGGGTAATGTTCCATCTTCAGTCATATCTAGTCACAG
CATGCATCTCGGTGTCCTTGCCACTGCATGGCATGCTGTCTCCACAGGAA
CTATGTTCACTGTCTATTACAAGCCAAGAACAAGCCCATCAGAGTTCATT
GTTCCGTATGATCAG
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