CB322092

Overview
NameCB322092
Unique NameCB322092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.717e-45
Identity = 81/134 (60.45%), Postives = 106/134 (79.10%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406
            RR A+   PPLD ++QPP QEL A+D+H  EW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+  E  +L +G+RRA R Q  +PSSV+SS SMH+G+LA A HA +T + FT++Y PR SPSEF++P
Sbjct:  154 RRAAERVFPPLDFTQQPPAQELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIP 287          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 1.032e-44
Identity = 80/135 (59.26%), Postives = 104/135 (77.04%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPY 409
            RR A++  PPLD S QPP QEL A+DLH N W FRHI+RGQP+RHLL +GWS+FVS KRL AGD+ IF+R E  +L +G+RRA RQ  N+ SSV+SS SMH+G+LA A HA +  + FT++Y PR SP+EF++P+
Sbjct:  173 RRAAEKIFPPLDFSMQPPAQELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFVRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTIFYNPRASPTEFVIPF 307          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFN_ARATH (Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 1.761e-44
Identity = 83/137 (60.58%), Postives = 105/137 (76.64%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQ 415
            ++HA ECLPPLDMS+  PTQE+ A DLHGN+WRFRHI+RG  +RHLL  GW+ F +SK+LV GD  +F+RGE GELRVG+RRA  QQGN+PSS++S  SM  G++A+A HA     MF V YKPR+  S+FIV YD+
Sbjct:  145 KKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYRGTAQRHLLTIGWNAFTTSKKLVEGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIVSIESMRHGIIASAKHAFDNQCMFIVVYKPRS--SQFIVSYDK 279          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 3.923e-44
Identity = 81/134 (60.45%), Postives = 102/134 (76.12%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406
            RR A++  PPLD S QPPTQEL  +DLH N W FRHI+RGQP+RHLL +GWS+FV SKRL AGD+ +F+R E  +L VGVRRA RQQ  +PSSV+S+ SMH+GVLA A HA +  T F ++Y PR  P+EF++P
Sbjct:  177 RRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPRACPAEFVIP 310          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSJ (Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.124e-44
Identity = 79/134 (58.96%), Postives = 104/134 (77.61%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406
            RR A++  PPLD + QPP QEL AKDLH   W+FRHI+RGQP+RHLL +GWSVFVS+KRL+AGD+ +F+R E  +L +G+RRA R Q  + SSV+SS SMH+G+LA A HA +  + FT++Y PR SPSEF++P
Sbjct:  146 RRAAEKIFPPLDFTMQPPAQELIAKDLHDISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFIRDEKSQLLLGIRRATRPQPALSSSVLSSDSMHIGILAAAAHAAANSSPFTIFYNPRASPSEFVIP 279          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSI (Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.124e-44
Identity = 79/134 (58.96%), Postives = 104/134 (77.61%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406
            RR A++  PPLD + QPP QEL AKDLH   W+FRHI+RGQP+RHLL +GWSVFVS+KRL+AGD+ +F+R E  +L +G+RRA R Q  + SSV+SS SMH+G+LA A HA +  + FT++Y PR SPSEF++P
Sbjct:  146 RRAAEKIFPPLDFTMQPPAQELIAKDLHDISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFIRDEKSQLLLGIRRATRPQPALSSSVLSSDSMHIGILAAAAHAAANSSPFTIFYNPRASPSEFVIP 279          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.124e-44
Identity = 81/134 (60.45%), Postives = 103/134 (76.87%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406
            RR A++  P LD S QPP QEL  +DLH N W FRHI+RGQP+RHLL +GWS+FV +KRL AGD+ +F+R E  +L +GVRRA RQQ  + SSV+S+ SMH+GVLA A HA S+G+ FT+YY PRTSPS F++P
Sbjct:  162 RRAAEKLFPQLDYSMQPPNQELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFIRDEKSQLLLGVRRATRQQTMLSSSVLSTDSMHIGVLAAAAHAASSGSSFTIYYNPRTSPSPFVIP 295          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 5.124e-44
Identity = 81/134 (60.45%), Postives = 103/134 (76.87%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406
            RR A++  P LD S QPP QEL  +DLH N W FRHI+RGQP+RHLL +GWS+FV +KRL AGD+ +F+R E  +L +GVRRA RQQ  + SSV+S+ SMH+GVLA A HA S+G+ FT+YY PRTSPS F++P
Sbjct:  162 RRAAEKLFPQLDYSMQPPNQELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFIRDEKSQLLLGVRRATRQQTMLSSSVLSTDSMHIGVLAAAAHAASSGSSFTIYYNPRTSPSPFVIP 295          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFL_ARATH (Auxin response factor 12 OS=Arabidopsis thaliana GN=ARF12 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 8.740e-44
Identity = 83/137 (60.58%), Postives = 104/137 (75.91%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQ 415
            ++HA ECLP LDMS+  P QEL A DLHGN+WRF H +RG P+RHLL +GW+ F +SK+LVAGD  +F+RGE GELRVG+RRA  QQGN+PSS++S   M  GV+A+A HA     MFTV YKPR+  S+FIV YD+
Sbjct:  145 KKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVVASAKHAFDNQCMFTVVYKPRS--SKFIVSYDK 279          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFE_ORYSJ (Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 8.740e-44
Identity = 79/135 (58.52%), Postives = 103/135 (76.30%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPY 409
            RR A++  PPLD S QPP QEL A+D+H N W FRHI+RGQP+RHLL +GWS+FVS KRL AGD+ I +R E  +L +G+RRA RQ  N+ SSV+SS SMH+GVLA A HA +  + FT++Y PR SP+EF++P+
Sbjct:  167 RRAAEKIFPPLDFSMQPPAQELQARDIHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIVVRDEKHQLLLGIRRANRQPTNISSSVLSSDSMHIGVLAAAAHAAANSSPFTIFYNPRASPTEFVIPF 301          
The following BLAST results are available for this feature:
BLAST of CB322092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ARFL_ORYSI2.717e-4560.45Auxin response factor 12 OS=Oryza sativa subsp. in... [more]
ARFS_ORYSJ1.032e-4459.26Auxin response factor 19 OS=Oryza sativa subsp. ja... [more]
ARFN_ARATH1.761e-4460.58Putative auxin response factor 14 OS=Arabidopsis t... [more]
ARFE_ARATH3.923e-4460.45Auxin response factor 5 OS=Arabidopsis thaliana GN... [more]
ARFP_ORYSJ5.124e-4458.96Auxin response factor 16 OS=Oryza sativa subsp. ja... [more]
ARFP_ORYSI5.124e-4458.96Auxin response factor 16 OS=Oryza sativa subsp. in... [more]
ARFK_ORYSJ5.124e-4460.45Auxin response factor 11 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSI5.124e-4460.45Auxin response factor 11 OS=Oryza sativa subsp. in... [more]
ARFL_ARATH8.740e-4460.58Auxin response factor 12 OS=Arabidopsis thaliana G... [more]
ARFE_ORYSJ8.740e-4458.52Auxin response factor 5 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionEST0200 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB016 similar to auxin response factor-like protein (acc# BAB10162), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322092 ID=CB322092; Name=CB322092; organism=Citrus sinensis; type=EST; length=415bp
ACTGAGACGGCATGCTGATGAGTGTCTTCCACCCTTGGACATGTCACGGC
AGCCTCCCACACAGGAGTTGGCTGCTAAGGATTTGCATGGAAATGAGTGG
CGGTTCCGGCATATTTTCAGGGGTCAACCACGTAGACACTTGCTTCAGAG
TGGATGGAGTGTTTTTGTTAGCTCAAAAAGACTAGTTGCAGGGGATGCTT
TTATATTTTTGAGGGGTGAGAATGGCGAACTTCGTGTTGGTGTAAGGCGA
GCAATGAGGCAGCAGGGTAATGTTCCATCTTCAGTCATATCTAGTCACAG
CATGCATCTCGGTGTCCTTGCCACTGCATGGCATGCTGTCTCCACAGGAA
CTATGTTCACTGTCTATTACAAGCCAAGAACAAGCCCATCAGAGTTCATT
GTTCCGTATGATCAG
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