CB322092

Overview
NameCB322092
Unique NameCB322092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFS_ARATH (Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 1.491e-43
Identity = 80/134 (59.70%), Postives = 102/134 (76.12%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406
            RR A++  PPLD S QPP QE+ AKDLH   W FRHI+RGQP+RHLL +GWSVFVS+KRL AGD+ +F+R E  +L +G+RRA RQ   + SSVISS SMH+G+LA A HA +  + FT+++ PR SPSEF+VP
Sbjct:  145 RRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVP 278          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFH_ARATH (Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 1.491e-43
Identity = 82/133 (61.65%), Postives = 104/133 (78.20%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 403
            RR A++  PPLD + QPP QEL A+DLH  EW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ IF+R E  +L +G+R A R Q  VPSSV+SS SMH+G+LA A HA +T + FTV++ PR S SEF++
Sbjct:  145 RRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVLSSDSMHIGLLAAAAHASATNSCFTVFFHPRASQSEFVI 277          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFO_ARATH (Putative auxin response factor 15 OS=Arabidopsis thaliana GN=ARF15 PE=3 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 1.947e-43
Identity = 82/137 (59.85%), Postives = 103/137 (75.18%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQ 415
            ++HA ECLPPLDMS+  P QEL A DLHGN+W FRH +RG P+RHLL +GW+ F +SK+LV GD  +F+RGE GELRVG+RRA  QQGN+PSS++S   M  GV+A+A HA     MF V YKPR+  S+FIV YD+
Sbjct:  145 KKHAIECLPPLDMSQPLPAQELLAIDLHGNQWSFRHSYRGTPQRHLLTTGWNEFTTSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAKHAFDNQCMFIVVYKPRS--SQFIVSYDK 279          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFO_ORYSJ (Auxin response factor 15 OS=Oryza sativa subsp. japonica GN=ARF15 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.543e-43
Identity = 80/135 (59.26%), Postives = 102/135 (75.56%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPY 409
            RR A++C PPLD S+Q P+QEL AKDLH  EWRFRHI+RGQPRRHLL +GWS FV+ K+LV+GDA +FLRG++GELR+GVRRA + +       + +   +LG LA   HAV+T ++F +YY PR S SEFIVPY
Sbjct:  161 RRAAEDCFPPLDYSQQRPSQELVAKDLHSTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGVRRAAQLKNGSAFPALYNQCSNLGTLANVAHAVATESVFNIYYNPRLSQSEFIVPY 295          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFU_ORYSJ (Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 7.399e-43
Identity = 78/135 (57.78%), Postives = 101/135 (74.81%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPY 409
            RR A+   P LD S QPP QEL A+DLH N W FRHI+RGQP+RHLL +GWS+FVS KRL+AGD+ +F+R    +L +G+RRA RQ  N+ SSV+SS SMH+G+LA A HA +  + FT+YY PR S SEF++P+
Sbjct:  151 RRAAERIFPRLDFSMQPPAQELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDAKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSQFTIYYNPRASTSEFVIPF 285          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFG_ARATH (Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 9.663e-43
Identity = 80/134 (59.70%), Postives = 102/134 (76.12%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406
            RR A++  P LD S QPP QEL AKD+H N W FRHI+RGQP+RHLL +GWSVFVS+KRL AGD+ +F+R    +L +G+RRA RQQ  + SSVISS SMH+GVLA A HA +  + FT++Y PR +P+EF+VP
Sbjct:  146 RRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDGKAQLLLGIRRANRQQPALSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPRAAPAEFVVP 279          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFU_ARATH (Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 3.672e-42
Identity = 79/137 (57.66%), Postives = 103/137 (75.18%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQ 415
            ++HA ECLPPLDMS+  P QE+ A DLH N+WRFRH +RG P+RH L +GW+ F++SK+LV GD  +F+RGE GELRVG+RRA  QQGN+PSS++S   M  GV+A+A HA     +F V YKPR+  S+FIV YD+
Sbjct:  145 KKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHNYRGTPQRHSLTTGWNEFITSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAKHAFDNQCIFIVVYKPRS--SQFIVSYDK 279          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.395e-41
Identity = 77/137 (56.20%), Postives = 104/137 (75.91%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQ 415
            RR A++C  PLD  +Q P+QEL AKDLHG EW+FRHI+RGQPRRHLL +GWS+FVS K LV+GDA +FLR E GELR+G+RRA R +  +P S+I  +S    +L+   +AVST +MF V+Y PR + +EF++PY++
Sbjct:  196 RRAAEDCFAPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRDEGGELRLGIRRAARPRNGLPDSIIEKNSCS-NILSLVANAVSTKSMFHVFYSPRATHAEFVIPYEK 331          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFT_ARATH (Auxin response factor 20 OS=Arabidopsis thaliana GN=ARF20 PE=2 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 1.822e-41
Identity = 78/137 (56.93%), Postives = 100/137 (72.99%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQ 415
            ++HA ECLPPL +    P QEL AKDLHGN+WRFRH +RG P+RH L +GW+ F +SK+LV GD  +F+RGE GELRVG+RRA  QQGN+PSS++S   M  GV+A+A HA+    +F V YKP    S+FIV YD+
Sbjct:  145 KKHAIECLPPLPL----PAQELLAKDLHGNQWRFRHSYRGTPQRHSLTTGWNEFTTSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAKHALDNQCIFIVVYKPSIRSSQFIVSYDK 277          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFB_ORYSJ (Auxin response factor 2 OS=Oryza sativa subsp. japonica GN=ARF2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.302e-41
Identity = 77/135 (57.04%), Postives = 99/135 (73.33%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPY 409
            RR A++C PPLD S Q P QEL AKDLHG EWRFRHI+RGQPRRHLL +GWS F++ K+LV+GDA +FLRGE+GELR+GVRRA + +   P   + +   +   L+   HAV+  ++F +YY PR S SEFI+PY
Sbjct:  166 RRAAEDCFPPLDYSLQRPFQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSGFINKKKLVSGDAVLFLRGEDGELRLGVRRAAQLKNASPFPALHNQISNTSSLSEVAHAVAVKSIFHIYYNPRLSQSEFIIPY 300          
The following BLAST results are available for this feature:
BLAST of CB322092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ARFS_ARATH1.491e-4359.70Auxin response factor 19 OS=Arabidopsis thaliana G... [more]
ARFH_ARATH1.491e-4361.65Auxin response factor 8 OS=Arabidopsis thaliana GN... [more]
ARFO_ARATH1.947e-4359.85Putative auxin response factor 15 OS=Arabidopsis t... [more]
ARFO_ORYSJ2.543e-4359.26Auxin response factor 15 OS=Oryza sativa subsp. ja... [more]
ARFU_ORYSJ7.399e-4357.78Auxin response factor 21 OS=Oryza sativa subsp. ja... [more]
ARFG_ARATH9.663e-4359.70Auxin response factor 7 OS=Arabidopsis thaliana GN... [more]
ARFU_ARATH3.672e-4257.66Putative auxin response factor 21 OS=Arabidopsis t... [more]
ARFD_ARATH1.395e-4156.20Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]
ARFT_ARATH1.822e-4156.93Auxin response factor 20 OS=Arabidopsis thaliana G... [more]
ARFB_ORYSJ5.302e-4157.04Auxin response factor 2 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionEST0200 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB016 similar to auxin response factor-like protein (acc# BAB10162), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322092 ID=CB322092; Name=CB322092; organism=Citrus sinensis; type=EST; length=415bp
ACTGAGACGGCATGCTGATGAGTGTCTTCCACCCTTGGACATGTCACGGC
AGCCTCCCACACAGGAGTTGGCTGCTAAGGATTTGCATGGAAATGAGTGG
CGGTTCCGGCATATTTTCAGGGGTCAACCACGTAGACACTTGCTTCAGAG
TGGATGGAGTGTTTTTGTTAGCTCAAAAAGACTAGTTGCAGGGGATGCTT
TTATATTTTTGAGGGGTGAGAATGGCGAACTTCGTGTTGGTGTAAGGCGA
GCAATGAGGCAGCAGGGTAATGTTCCATCTTCAGTCATATCTAGTCACAG
CATGCATCTCGGTGTCCTTGCCACTGCATGGCATGCTGTCTCCACAGGAA
CTATGTTCACTGTCTATTACAAGCCAAGAACAAGCCCATCAGAGTTCATT
GTTCCGTATGATCAG
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