CB322092

Overview
NameCB322092
Unique NameCB322092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFM_ARATH (Auxin response factor 13 OS=Arabidopsis thaliana GN=ARF13 PE=2 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 2.015e-40
Identity = 78/139 (56.12%), Postives = 103/139 (74.10%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSG--WSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQ 415
            +++A EC PPLDMS+   TQ L AKDL+G EW F+H+FRG P+RH+  SG  WSVF ++KRL+ GD F+ LRGENGELR G+RRA  QQG++PSSVIS++ M  GV+A+  +A  T  MF V YKP  S S+F++ YD+
Sbjct:  143 KQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGGGWSVFATTKRLIVGDIFVLLRGENGELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVVNAFKTKCMFNVVYKP--SSSQFVISYDK 279          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFC_ARATH (Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 2.463e-38
Identity = 72/134 (53.73%), Postives = 100/134 (74.63%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406
            RR A++C PPLD S+  P+QEL A+DLHG EWRFRHI+RGQPRRHLL +GWS FV+ K+LV+GDA +FLRG++G+LR+GVRRA + +G    S   + +M+    +   HA+ST ++F++ Y P+ S S FI+P
Sbjct:  178 RRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFSISYNPKASWSNFIIP 311          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFC_ORYSJ (Auxin response factor 3 OS=Oryza sativa subsp. japonica GN=ARF3 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.360e-38
Identity = 71/135 (52.59%), Postives = 97/135 (71.85%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPY 409
            RR A++C PPLD  +  P+QEL AKDLHG +WRFRHI+RGQPRRHLL +GWS FV+ K+LV+GDA +FLRG++GELR+GVRRA + +        SS S  +  L+    ++  G++F + Y PR + SE++VPY
Sbjct:  210 RRAAEDCFPPLDHKQLRPSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFLRGDDGELRLGVRRATQLKNEAIFKAFSSESSKMRTLSAVADSLKHGSVFHICYNPRATASEYVVPY 344          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFN_ORYSJ (Auxin response factor 14 OS=Oryza sativa subsp. japonica GN=ARF14 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 2.549e-35
Identity = 67/135 (49.63%), Postives = 96/135 (71.11%), Query Frame = 2
Query:    5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPY 409
            RR A++C PPLD     P+QEL A DLHG +W+FRHI+RGQPRRHLL  GWS FV+ K+LV+GDA +FLRG++G+LR+GVRRA++ +       ++S    L +L++   ++   ++F + + PR+  SEFIVPY
Sbjct:  152 RRAAEDCFPPLDYKTVRPSQELIAVDLHGTQWKFRHIYRGQPRRHLLTIGWSSFVNRKKLVSGDAVLFLRGDDGQLRLGVRRAVQLRNEALFEPVNSSDSKLRILSSVASSLENKSVFHICFNPRSGASEFIVPY 286          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFJ_ARATH (Auxin response factor 10 OS=Arabidopsis thaliana GN=ARF10 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.689e-26
Identity = 62/166 (37.35%), Postives = 86/166 (51.81%), Query Frame = 2
Query:   14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRA------------------------------------MRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 403
            A+   P LD S +PP Q + AKD+HG  W+FRHI+RG PRRHLL +GWS FV+ K+L+AGD+ +FLR E+G+L VG+RRA                                    M++ GN   +  ++  + +  +A A    + G  F V Y PR S  EF V
Sbjct:  137 AETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKRGGLGSNAGSDNPYPGFSGFLRDDESTTTTSKLMMMKRNGNNDGNAAATGRVRVEAVAEAVARAACGQAFEVVYYPRASTPEFCV 302          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.391e-25
Identity = 70/164 (42.68%), Postives = 92/164 (56.10%), Query Frame = 2
Query:   14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQ-GNVP---------------SSVI---SSHSMHL---------------GVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 403
            A+   P LD + +PP Q + AKD+HG+ W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +F+R ENG+L VG+RRA R   GN P               SS++    S+S+                  V+  A  A+S G  F V Y PR S SEF V
Sbjct:  142 AETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFMRAENGDLCVGIRRAKRGGIGNGPEYSAGWNPIGGSCGYSSLLREDESNSLRRSNCSLADRKGKVTAESVIEAATLAIS-GRPFEVVYYPRASTSEFCV 304          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFH_ORYSJ (Auxin response factor 8 OS=Oryza sativa subsp. japonica GN=ARF8 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.087e-25
Identity = 61/155 (39.35%), Postives = 82/155 (52.90%), Query Frame = 2
Query:   14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR---------QQGNVP----------------SSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 403
            A+   P LD +  PP Q + AKD+HG  W FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLRG+ G+L VG+RRA R         ++ ++P                ++      +    L  A    + G  F V Y PR S  EF V
Sbjct:  142 AETIFPRLDYAADPPVQTVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRGDGGDLHVGIRRAKRGFCGGGGGAEEASLPGWDQYGGLMRGNASPCAAAKGRGKVRAEDLVEAARLANGGQPFEVVYYPRASTPEFCV 296          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSJ (Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 2.024e-24
Identity = 63/159 (39.62%), Postives = 82/159 (51.57%), Query Frame = 2
Query:   14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPS-----SVISSHSMHLGVL------------------------ATAWHAVSTGTMFTVYYKPRTSPSEFIV 403
            A+   P LD S +PP Q + AKD+HG EW FRHI+RG PRRHLL +GWS FV+ K+L AGD+ +F+R E G + VG+RRA R   ++       S I     + G++                         TA    +TG  F V Y PR S  EF V
Sbjct:  147 AETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFMRDEGGNIHVGLRRAKRGFCSIGGDDESLSSIPGWDQYRGLMRRNATATATGGRTPPKGKVPPENVLTAATRATTGQPFEVLYYPRASTPEFCV 305          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSI (Auxin responsive factor 10 OS=Oryza sativa subsp. indica GN=ARF10 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.024e-24
Identity = 63/159 (39.62%), Postives = 82/159 (51.57%), Query Frame = 2
Query:   14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPS-----SVISSHSMHLGVL------------------------ATAWHAVSTGTMFTVYYKPRTSPSEFIV 403
            A+   P LD S +PP Q + AKD+HG EW FRHI+RG PRRHLL +GWS FV+ K+L AGD+ +F+R E G + VG+RRA R   ++       S I     + G++                         TA    +TG  F V Y PR S  EF V
Sbjct:  147 AETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFMRDEGGNIHVGLRRAKRGFCSIGGDDESLSSIPGWDQYRGLMRRNATATATGGRTPPKGKVPPENVLTAATRATTGQPFEVLYYPRASTPEFCV 305          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFR_ORYSJ (Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.890e-24
Identity = 48/82 (58.54%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 259
            A+   P LD S  PP Q + AKD+HG  W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +F+R ENG+L VG+RRA +
Sbjct:  150 AETIFPRLDYSADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFMRTENGDLCVGIRRAKK 231          
The following BLAST results are available for this feature:
BLAST of CB322092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ARFM_ARATH2.015e-4056.12Auxin response factor 13 OS=Arabidopsis thaliana G... [more]
ARFC_ARATH2.463e-3853.73Auxin response factor 3 OS=Arabidopsis thaliana GN... [more]
ARFC_ORYSJ9.360e-3852.59Auxin response factor 3 OS=Oryza sativa subsp. jap... [more]
ARFN_ORYSJ2.549e-3549.63Auxin response factor 14 OS=Oryza sativa subsp. ja... [more]
ARFJ_ARATH3.689e-2637.35Auxin response factor 10 OS=Arabidopsis thaliana G... [more]
ARFP_ARATH2.391e-2542.68Auxin response factor 16 OS=Arabidopsis thaliana G... [more]
ARFH_ORYSJ9.087e-2539.35Auxin response factor 8 OS=Oryza sativa subsp. jap... [more]
ARFJ_ORYSJ2.024e-2439.62Auxin response factor 10 OS=Oryza sativa subsp. ja... [more]
ARFJ_ORYSI2.024e-2439.62Auxin responsive factor 10 OS=Oryza sativa subsp. ... [more]
ARFR_ORYSJ5.890e-2458.54Auxin response factor 18 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionEST0200 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB016 similar to auxin response factor-like protein (acc# BAB10162), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322092 ID=CB322092; Name=CB322092; organism=Citrus sinensis; type=EST; length=415bp
ACTGAGACGGCATGCTGATGAGTGTCTTCCACCCTTGGACATGTCACGGC
AGCCTCCCACACAGGAGTTGGCTGCTAAGGATTTGCATGGAAATGAGTGG
CGGTTCCGGCATATTTTCAGGGGTCAACCACGTAGACACTTGCTTCAGAG
TGGATGGAGTGTTTTTGTTAGCTCAAAAAGACTAGTTGCAGGGGATGCTT
TTATATTTTTGAGGGGTGAGAATGGCGAACTTCGTGTTGGTGTAAGGCGA
GCAATGAGGCAGCAGGGTAATGTTCCATCTTCAGTCATATCTAGTCACAG
CATGCATCTCGGTGTCCTTGCCACTGCATGGCATGCTGTCTCCACAGGAA
CTATGTTCACTGTCTATTACAAGCCAAGAACAAGCCCATCAGAGTTCATT
GTTCCGTATGATCAG
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