CB322092
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFM_ARATH (Auxin response factor 13 OS=Arabidopsis thaliana GN=ARF13 PE=2 SV=3) HSP 1 Score: 164.081 bits (414), Expect = 2.015e-40 Identity = 78/139 (56.12%), Postives = 103/139 (74.10%), Query Frame = 2 Query: 5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSG--WSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQ 415 +++A EC PPLDMS+ TQ L AKDL+G EW F+H+FRG P+RH+ SG WSVF ++KRL+ GD F+ LRGENGELR G+RRA QQG++PSSVIS++ M GV+A+ +A T MF V YKP S S+F++ YD+ Sbjct: 143 KQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGGGWSVFATTKRLIVGDIFVLLRGENGELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVVNAFKTKCMFNVVYKP--SSSQFVISYDK 279
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFC_ARATH (Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2) HSP 1 Score: 157.147 bits (396), Expect = 2.463e-38 Identity = 72/134 (53.73%), Postives = 100/134 (74.63%), Query Frame = 2 Query: 5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406 RR A++C PPLD S+ P+QEL A+DLHG EWRFRHI+RGQPRRHLL +GWS FV+ K+LV+GDA +FLRG++G+LR+GVRRA + +G S + +M+ + HA+ST ++F++ Y P+ S S FI+P Sbjct: 178 RRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFSISYNPKASWSNFIIP 311
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFC_ORYSJ (Auxin response factor 3 OS=Oryza sativa subsp. japonica GN=ARF3 PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 9.360e-38 Identity = 71/135 (52.59%), Postives = 97/135 (71.85%), Query Frame = 2 Query: 5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPY 409 RR A++C PPLD + P+QEL AKDLHG +WRFRHI+RGQPRRHLL +GWS FV+ K+LV+GDA +FLRG++GELR+GVRRA + + SS S + L+ ++ G++F + Y PR + SE++VPY Sbjct: 210 RRAAEDCFPPLDHKQLRPSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFLRGDDGELRLGVRRATQLKNEAIFKAFSSESSKMRTLSAVADSLKHGSVFHICYNPRATASEYVVPY 344
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFN_ORYSJ (Auxin response factor 14 OS=Oryza sativa subsp. japonica GN=ARF14 PE=2 SV=2) HSP 1 Score: 147.132 bits (370), Expect = 2.549e-35 Identity = 67/135 (49.63%), Postives = 96/135 (71.11%), Query Frame = 2 Query: 5 RRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPY 409 RR A++C PPLD P+QEL A DLHG +W+FRHI+RGQPRRHLL GWS FV+ K+LV+GDA +FLRG++G+LR+GVRRA++ + ++S L +L++ ++ ++F + + PR+ SEFIVPY Sbjct: 152 RRAAEDCFPPLDYKTVRPSQELIAVDLHGTQWKFRHIYRGQPRRHLLTIGWSSFVNRKKLVSGDAVLFLRGDDGQLRLGVRRAVQLRNEALFEPVNSSDSKLRILSSVASSLENKSVFHICFNPRSGASEFIVPY 286
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFJ_ARATH (Auxin response factor 10 OS=Arabidopsis thaliana GN=ARF10 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 3.689e-26 Identity = 62/166 (37.35%), Postives = 86/166 (51.81%), Query Frame = 2 Query: 14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRA------------------------------------MRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 403 A+ P LD S +PP Q + AKD+HG W+FRHI+RG PRRHLL +GWS FV+ K+L+AGD+ +FLR E+G+L VG+RRA M++ GN + ++ + + +A A + G F V Y PR S EF V Sbjct: 137 AETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKRGGLGSNAGSDNPYPGFSGFLRDDESTTTTSKLMMMKRNGNNDGNAAATGRVRVEAVAEAVARAACGQAFEVVYYPRASTPEFCV 302
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 2.391e-25 Identity = 70/164 (42.68%), Postives = 92/164 (56.10%), Query Frame = 2 Query: 14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQ-GNVP---------------SSVI---SSHSMHL---------------GVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 403 A+ P LD + +PP Q + AKD+HG+ W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +F+R ENG+L VG+RRA R GN P SS++ S+S+ V+ A A+S G F V Y PR S SEF V Sbjct: 142 AETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFMRAENGDLCVGIRRAKRGGIGNGPEYSAGWNPIGGSCGYSSLLREDESNSLRRSNCSLADRKGKVTAESVIEAATLAIS-GRPFEVVYYPRASTSEFCV 304
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFH_ORYSJ (Auxin response factor 8 OS=Oryza sativa subsp. japonica GN=ARF8 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 9.087e-25 Identity = 61/155 (39.35%), Postives = 82/155 (52.90%), Query Frame = 2 Query: 14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR---------QQGNVP----------------SSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 403 A+ P LD + PP Q + AKD+HG W FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLRG+ G+L VG+RRA R ++ ++P ++ + L A + G F V Y PR S EF V Sbjct: 142 AETIFPRLDYAADPPVQTVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRGDGGDLHVGIRRAKRGFCGGGGGAEEASLPGWDQYGGLMRGNASPCAAAKGRGKVRAEDLVEAARLANGGQPFEVVYYPRASTPEFCV 296
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSJ (Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=3) HSP 1 Score: 110.923 bits (276), Expect = 2.024e-24 Identity = 63/159 (39.62%), Postives = 82/159 (51.57%), Query Frame = 2 Query: 14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPS-----SVISSHSMHLGVL------------------------ATAWHAVSTGTMFTVYYKPRTSPSEFIV 403 A+ P LD S +PP Q + AKD+HG EW FRHI+RG PRRHLL +GWS FV+ K+L AGD+ +F+R E G + VG+RRA R ++ S I + G++ TA +TG F V Y PR S EF V Sbjct: 147 AETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFMRDEGGNIHVGLRRAKRGFCSIGGDDESLSSIPGWDQYRGLMRRNATATATGGRTPPKGKVPPENVLTAATRATTGQPFEVLYYPRASTPEFCV 305
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSI (Auxin responsive factor 10 OS=Oryza sativa subsp. indica GN=ARF10 PE=2 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 2.024e-24 Identity = 63/159 (39.62%), Postives = 82/159 (51.57%), Query Frame = 2 Query: 14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPS-----SVISSHSMHLGVL------------------------ATAWHAVSTGTMFTVYYKPRTSPSEFIV 403 A+ P LD S +PP Q + AKD+HG EW FRHI+RG PRRHLL +GWS FV+ K+L AGD+ +F+R E G + VG+RRA R ++ S I + G++ TA +TG F V Y PR S EF V Sbjct: 147 AETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFMRDEGGNIHVGLRRAKRGFCSIGGDDESLSSIPGWDQYRGLMRRNATATATGGRTPPKGKVPPENVLTAATRATTGQPFEVLYYPRASTPEFCV 305
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFR_ORYSJ (Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 5.890e-24 Identity = 48/82 (58.54%), Postives = 62/82 (75.61%), Query Frame = 2 Query: 14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 259 A+ P LD S PP Q + AKD+HG W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +F+R ENG+L VG+RRA + Sbjct: 150 AETIFPRLDYSADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFMRTENGDLCVGIRRAKK 231 The following BLAST results are available for this feature:
BLAST of CB322092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >CB322092 ID=CB322092; Name=CB322092; organism=Citrus sinensis; type=EST; length=415bpback to top |