CB322092
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 7.692e-24 Identity = 63/164 (38.41%), Postives = 83/164 (50.61%), Query Frame = 2 Query: 14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQ---------GNVP---------------SSVISSH----------SMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 403 A+ P LD PP Q + AKD+HG W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLR +GEL VG+RRA R N P S ++ H + + + A S+G F V Y PR S +F+V Sbjct: 150 AETIFPKLDYRADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRTRHGELCVGIRRAKRMACGGMECMSGWNAPGYGGGGFSAFLKEEESKLMKGHGGGGYMKGKGKVRMADVVEAASLASSGQPFEVAYYPRASTPDFVV 313
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFW_ARATH (Putative auxin response factor 23 OS=Arabidopsis thaliana GN=ARF23 PE=5 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 2.095e-21 Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 2 Query: 8 RHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVR 247 +HA ECLPPLDMS+ P QEL A DLHGN+WRF+H +R PR +GW+ F +SK+LV GD +F RGE GELRVG+R Sbjct: 146 KHAIECLPPLDMSQPIPAQELIAIDLHGNQWRFKHSYR-VPRGD--TTGWNAFTTSKKLVVGDVIVFARGETGELRVGIR 222
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFM_ORYSJ (Auxin response factor 13 OS=Oryza sativa subsp. japonica GN=ARF13 PE=2 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 2.736e-21 Identity = 56/135 (41.48%), Postives = 73/135 (54.07%), Query Frame = 2 Query: 14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL----RGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406 AD P L++ PP Q L DL G+ W FRHI+RG PRRHLL +GWS FV++K+LVAGD +F+ +L VGVRRA R G S+ + + + A + F V Y PR EF+VP Sbjct: 150 ADHIFPALNLDDDPPVQSLTMGDLQGDSWEFRHIYRGTPRRHLLTTGWSKFVNAKQLVAGDTVVFMWCGAPAPERKLLVGVRRAARYSGE--SACNARGRVQPQEVMEAVRLAAEQAAFRVTYYPRHGAGEFVVP 282
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFQ_ARATH (Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.501e-19 Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 2 Query: 14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRR 250 AD P L+ PP Q+L D+HG W FRHI+RG PRRHLL +GWS FV+SK+L+AGD+ +F+R E+ +GVRR Sbjct: 141 ADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFMRKSADEMFIGVRR 219
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFT_ORYSJ (Putative auxin response factor 20 OS=Oryza sativa subsp. japonica GN=ARF20 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.777e-12 Identity = 49/148 (33.11%), Postives = 72/148 (48.65%), Query Frame = 2 Query: 14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLL-------QSGWSVFVSSKRLVAGDAFIFLR------GENGELRVGVRRAMRQQ-GNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQ 415 A+ LPPLD++ + +DL G + F HI+ + R++L GW FV +KRL D +F+R +GEL VGVRRA R + G+ P + + V++ W A+ T F V Y PR EF+V D+ Sbjct: 140 AEHVLPPLDIAAYQTARLFDVRDLRGKRFEFVHIWDKKRCRYMLGDLGVNDNDGWRGFVKAKRLATRDTVVFMRRGGGDGDGDGELLVGVRRAPRARGGHHPRPGVEDNK----VVSEVWLAMQGVTPFEVTYYPREGTFEFVVSRDE 283 HSP 2 Score: 66.2402 bits (160), Expect = 5.718e-11 Identity = 43/123 (34.96%), Postives = 57/123 (46.34%), Query Frame = 2 Query: 53 PPTQELAAKDLHGNEWRFRHIFRG-----QPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGE-NGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 403 P +L +L G W F H + + H L +GWS FV +KRL GD IF+R GE VGVRR + G +P + H +A AW S+ F V Y P +EF+V Sbjct: 469 PRIPDLRVTNLQGGRWEFGHTWSDADTDRRSSSHTLAAGWSAFVKAKRLCVGDTVIFMRRRPGGEPLVGVRR--KPHGGMPVGIPDKH------VADAWLDASSAQPFRVTYCPWQGTAEFVV 583 The following BLAST results are available for this feature:
BLAST of CB322092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >CB322092 ID=CB322092; Name=CB322092; organism=Citrus sinensis; type=EST; length=415bpback to top |