CB322092

Overview
NameCB322092
Unique NameCB322092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.692e-24
Identity = 63/164 (38.41%), Postives = 83/164 (50.61%), Query Frame = 2
Query:   14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQ---------GNVP---------------SSVISSH----------SMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 403
            A+   P LD    PP Q + AKD+HG  W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLR  +GEL VG+RRA R            N P               S ++  H           + +  +  A    S+G  F V Y PR S  +F+V
Sbjct:  150 AETIFPKLDYRADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRTRHGELCVGIRRAKRMACGGMECMSGWNAPGYGGGGFSAFLKEEESKLMKGHGGGGYMKGKGKVRMADVVEAASLASSGQPFEVAYYPRASTPDFVV 313          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFW_ARATH (Putative auxin response factor 23 OS=Arabidopsis thaliana GN=ARF23 PE=5 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.095e-21
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 2
Query:    8 RHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVR 247
            +HA ECLPPLDMS+  P QEL A DLHGN+WRF+H +R  PR     +GW+ F +SK+LV GD  +F RGE GELRVG+R
Sbjct:  146 KHAIECLPPLDMSQPIPAQELIAIDLHGNQWRFKHSYR-VPRGD--TTGWNAFTTSKKLVVGDVIVFARGETGELRVGIR 222          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFM_ORYSJ (Auxin response factor 13 OS=Oryza sativa subsp. japonica GN=ARF13 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.736e-21
Identity = 56/135 (41.48%), Postives = 73/135 (54.07%), Query Frame = 2
Query:   14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL----RGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 406
            AD   P L++   PP Q L   DL G+ W FRHI+RG PRRHLL +GWS FV++K+LVAGD  +F+         +L VGVRRA R  G   S+  +   +    +  A    +    F V Y PR    EF+VP
Sbjct:  150 ADHIFPALNLDDDPPVQSLTMGDLQGDSWEFRHIYRGTPRRHLLTTGWSKFVNAKQLVAGDTVVFMWCGAPAPERKLLVGVRRAARYSGE--SACNARGRVQPQEVMEAVRLAAEQAAFRVTYYPRHGAGEFVVP 282          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFQ_ARATH (Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.501e-19
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 2
Query:   14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRR 250
            AD   P L+    PP Q+L   D+HG  W FRHI+RG PRRHLL +GWS FV+SK+L+AGD+ +F+R    E+ +GVRR
Sbjct:  141 ADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFMRKSADEMFIGVRR 219          
BLAST of CB322092 vs. ExPASy Swiss-Prot
Match: ARFT_ORYSJ (Putative auxin response factor 20 OS=Oryza sativa subsp. japonica GN=ARF20 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.777e-12
Identity = 49/148 (33.11%), Postives = 72/148 (48.65%), Query Frame = 2
Query:   14 ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLL-------QSGWSVFVSSKRLVAGDAFIFLR------GENGELRVGVRRAMRQQ-GNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQ 415
            A+  LPPLD++     +    +DL G  + F HI+  +  R++L         GW  FV +KRL   D  +F+R        +GEL VGVRRA R + G+ P   +  +     V++  W A+   T F V Y PR    EF+V  D+
Sbjct:  140 AEHVLPPLDIAAYQTARLFDVRDLRGKRFEFVHIWDKKRCRYMLGDLGVNDNDGWRGFVKAKRLATRDTVVFMRRGGGDGDGDGELLVGVRRAPRARGGHHPRPGVEDNK----VVSEVWLAMQGVTPFEVTYYPREGTFEFVVSRDE 283          

HSP 2 Score: 66.2402 bits (160), Expect = 5.718e-11
Identity = 43/123 (34.96%), Postives = 57/123 (46.34%), Query Frame = 2
Query:   53 PPTQELAAKDLHGNEWRFRHIFRG-----QPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGE-NGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 403
            P   +L   +L G  W F H +       +   H L +GWS FV +KRL  GD  IF+R    GE  VGVRR  +  G +P  +   H      +A AW   S+   F V Y P    +EF+V
Sbjct:  469 PRIPDLRVTNLQGGRWEFGHTWSDADTDRRSSSHTLAAGWSAFVKAKRLCVGDTVIFMRRRPGGEPLVGVRR--KPHGGMPVGIPDKH------VADAWLDASSAQPFRVTYCPWQGTAEFVV 583          
The following BLAST results are available for this feature:
BLAST of CB322092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ARFV_ORYSJ7.692e-2438.41Auxin response factor 22 OS=Oryza sativa subsp. ja... [more]
ARFW_ARATH2.095e-2160.00Putative auxin response factor 23 OS=Arabidopsis t... [more]
ARFM_ORYSJ2.736e-2141.48Auxin response factor 13 OS=Oryza sativa subsp. ja... [more]
ARFQ_ARATH1.501e-1953.16Auxin response factor 17 OS=Arabidopsis thaliana G... [more]
ARFT_ORYSJ1.777e-1233.11Putative auxin response factor 20 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionEST0200 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB016 similar to auxin response factor-like protein (acc# BAB10162), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322092 ID=CB322092; Name=CB322092; organism=Citrus sinensis; type=EST; length=415bp
ACTGAGACGGCATGCTGATGAGTGTCTTCCACCCTTGGACATGTCACGGC
AGCCTCCCACACAGGAGTTGGCTGCTAAGGATTTGCATGGAAATGAGTGG
CGGTTCCGGCATATTTTCAGGGGTCAACCACGTAGACACTTGCTTCAGAG
TGGATGGAGTGTTTTTGTTAGCTCAAAAAGACTAGTTGCAGGGGATGCTT
TTATATTTTTGAGGGGTGAGAATGGCGAACTTCGTGTTGGTGTAAGGCGA
GCAATGAGGCAGCAGGGTAATGTTCCATCTTCAGTCATATCTAGTCACAG
CATGCATCTCGGTGTCCTTGCCACTGCATGGCATGCTGTCTCCACAGGAA
CTATGTTCACTGTCTATTACAAGCCAAGAACAAGCCCATCAGAGTTCATT
GTTCCGTATGATCAG
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