CB322093

Overview
NameCB322093
Unique NameCB322093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_SOLBU (Photosystem Q(B) protein OS=Solanum bulbocastanum GN=psbA PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.009e-53
Identity = 99/113 (87.61%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_SINAL (Photosystem Q(B) protein OS=Sinapis alba GN=psbA PE=3 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 6.009e-53
Identity = 99/113 (87.61%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_SECCE (Photosystem Q(B) protein OS=Secale cereale GN=psbA PE=1 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 6.009e-53
Identity = 99/113 (87.61%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_SACOF (Photosystem Q(B) protein OS=Saccharum officinarum GN=psbA PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.009e-53
Identity = 99/113 (87.61%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_SACHY (Photosystem Q(B) protein OS=Saccharum hybrid GN=psbA PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.009e-53
Identity = 99/113 (87.61%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PSINU (Photosystem Q(B) protein OS=Psilotum nudum GN=psbA PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.009e-53
Identity = 99/113 (87.61%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_POPTR (Photosystem Q(B) protein OS=Populus trichocarpa GN=psbA PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.009e-53
Identity = 99/113 (87.61%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_POPDE (Photosystem Q(B) protein OS=Populus deltoides GN=psbA PE=3 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 6.009e-53
Identity = 99/113 (87.61%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_POPAL (Photosystem Q(B) protein OS=Populus alba GN=psbA PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.009e-53
Identity = 99/113 (87.61%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PLAOC (Photosystem Q(B) protein OS=Platanus occidentalis GN=psbA PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.009e-53
Identity = 99/113 (87.61%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
The following BLAST results are available for this feature:
BLAST of CB322093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PSBA_SOLBU6.009e-5387.61Photosystem Q(B) protein OS=Solanum bulbocastanum ... [more]
PSBA_SINAL6.009e-5387.61Photosystem Q(B) protein OS=Sinapis alba GN=psbA P... [more]
PSBA_SECCE6.009e-5387.61Photosystem Q(B) protein OS=Secale cereale GN=psbA... [more]
PSBA_SACOF6.009e-5387.61Photosystem Q(B) protein OS=Saccharum officinarum ... [more]
PSBA_SACHY6.009e-5387.61Photosystem Q(B) protein OS=Saccharum hybrid GN=ps... [more]
PSBA_PSINU6.009e-5387.61Photosystem Q(B) protein OS=Psilotum nudum GN=psbA... [more]
PSBA_POPTR6.009e-5387.61Photosystem Q(B) protein OS=Populus trichocarpa GN... [more]
PSBA_POPDE6.009e-5387.61Photosystem Q(B) protein OS=Populus deltoides GN=p... [more]
PSBA_POPAL6.009e-5387.61Photosystem Q(B) protein OS=Populus alba GN=psbA P... [more]
PSBA_PLAOC6.009e-5387.61Photosystem Q(B) protein OS=Platanus occidentalis ... [more]

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Properties
Property NameValue
Genbank descriptionEST0201 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB017 similar to photosystem II protein D1 (acc# AAM12551), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322093 ID=CB322093; Name=CB322093; organism=Citrus sinensis; type=EST; length=343bp
GTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGT
GCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATG
GGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGC
TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG
TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA
TTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCG
GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGG
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