CB322093

Overview
NameCB322093
Unique NameCB322093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_CYACA (Photosystem Q(B) protein OS=Cyanidium caldarium GN=psbA PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 8.979e-49
Identity = 89/113 (78.76%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNII+GA++PTS AIGLH YPIWEAAS+DEWLYNGGPY+L+VLHFLLGVA YMGREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIITGAVVPTSNAIGLHLYPIWEAASLDEWLYNGGPYQLVVLHFLLGVAAYMGREWELSYRLGMRPWICVAFSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_CHLEL (Photosystem Q(B) protein OS=Chlorella ellipsoidea GN=psbA PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 8.979e-49
Identity = 88/113 (77.88%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSG LLYGNNIISGA++PTS AIGLHFYPIWEAAS+DEWLYNGGPY+LIV HF LG+ CYMGREWELSFRLGMRPWI              F+IYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGYLLYGNNIISGAVVPTSNAIGLHFYPIWEAASLDEWLYNGGPYQLIVCHFFLGICCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFIIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA3_THEEB (Photosystem Q(B) protein 3 OS=Thermosynechococcus elongatus (strain BP-1) GN=psbA3 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.173e-48
Identity = 87/113 (76.99%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNII+GA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+LI+ HFL+GV CYMGREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLIGVFCYMGREWELSYRLGMRPWICVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_CHLVU (Photosystem Q(B) protein OS=Chlorella vulgaris GN=psbA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.532e-48
Identity = 90/113 (79.65%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTS AIGLHFYPIWEAAS+DEWLYNGGPY+LIV HF LG+  YMGREWELSFRLGMRPWI              F+IYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSNAIGLHFYPIWEAASLDEWLYNGGPYQLIVCHFFLGICSYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFIIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA3_SYNP6 (Photosystem Q(B) protein 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psbA3 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.532e-48
Identity = 85/113 (75.22%), Postives = 97/113 (85.84%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L+V HFLLG++CYMGR+WELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLMYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVVFHFLLGISCYMGRQWELSYRLGMRPWICVAYSAPLSAAFAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNP2 (Photosystem Q(B) protein 1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=psbA1 PE=3 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 1.532e-48
Identity = 86/113 (76.11%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L++ HFL+GV CYMGREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLIGVFCYMGREWELSYRLGMRPWICVAFSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNE7 (Photosystem Q(B) protein 1 OS=Synechococcus elongatus (strain PCC 7942) GN=psbA1 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.532e-48
Identity = 85/113 (75.22%), Postives = 97/113 (85.84%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L+V HFLLG++CYMGR+WELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLMYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVVFHFLLGISCYMGRQWELSYRLGMRPWICVAYSAPLSAAFAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_THEVL (Photosystem Q(B) protein OS=Thermosynechococcus vulcanus GN=psbA PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.000e-48
Identity = 86/113 (76.11%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNII+GA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+LI+ HFLLG +CYMGR+WELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_MICAN (Photosystem Q(B) protein OS=Microcystis aeruginosa (strain NIES-843) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.000e-48
Identity = 86/113 (76.11%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L++ HFLLGV CY+GR+WELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLLGVFCYLGRQWELSFRLGMRPWICVAYSAPVSAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_MICAE (Photosystem Q(B) protein OS=Microcystis aeruginosa GN=psbA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.000e-48
Identity = 86/113 (76.11%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L++ HFLLGV CY+GR+WELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLLGVFCYLGRQWELSFRLGMRPWICVAYSAPVSAATAVFLIYPIGQGSFSDGMPLGIS 177
The following BLAST results are available for this feature:
BLAST of CB322093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PSBA_CYACA8.979e-4978.76Photosystem Q(B) protein OS=Cyanidium caldarium GN... [more]
PSBA_CHLEL8.979e-4977.88Photosystem Q(B) protein OS=Chlorella ellipsoidea ... [more]
PSBA3_THEEB1.173e-4876.99Photosystem Q(B) protein 3 OS=Thermosynechococcus ... [more]
PSBA_CHLVU1.532e-4879.65Photosystem Q(B) protein OS=Chlorella vulgaris GN=... [more]
PSBA3_SYNP61.532e-4875.22Photosystem Q(B) protein 3 OS=Synechococcus sp. (s... [more]
PSBA1_SYNP21.532e-4876.11Photosystem Q(B) protein 1 OS=Synechococcus sp. (s... [more]
PSBA1_SYNE71.532e-4875.22Photosystem Q(B) protein 1 OS=Synechococcus elonga... [more]
PSBA_THEVL2.000e-4876.11Photosystem Q(B) protein OS=Thermosynechococcus vu... [more]
PSBA_MICAN2.000e-4876.11Photosystem Q(B) protein OS=Microcystis aeruginosa... [more]
PSBA_MICAE2.000e-4876.11Photosystem Q(B) protein OS=Microcystis aeruginosa... [more]

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Properties
Property NameValue
Genbank descriptionEST0201 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB017 similar to photosystem II protein D1 (acc# AAM12551), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322093 ID=CB322093; Name=CB322093; organism=Citrus sinensis; type=EST; length=343bp
GTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGT
GCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATG
GGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGC
TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG
TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA
TTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCG
GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGG
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