CB322093

Overview
NameCB322093
Unique NameCB322093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_SYNEN (Photosystem Q(B) protein 2 OS=Synechococcus elongatus naegeli GN=psbA2 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.027e-44
Identity = 80/113 (70.80%), Postives = 92/113 (81.42%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNII+ A++P+S AIGLH YPIW+AAS+DEWLYNGGPY+LI+ HFL+G+ CYMGREWELS+RLGMRPWI               LIYPIGQGSFSDG+ LGIS
Sbjct:   65 EPVSGSLLYGNNIITAAVVPSSNAIGLHLYPIWDAASLDEWLYNGGPYQLIIFHFLIGIFCYMGREWELSYRLGMRPWIPVAFSAPVAAATAVLLIYPIGQGSFSDGLMLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA3_ANASP (Photosystem Q(B) protein 3 OS=Anabaena sp. (strain PCC 7120) GN=psbA5 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.289e-44
Identity = 81/113 (71.68%), Postives = 91/113 (80.53%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNII+  ++PTSAAIGLH YPIWEAAS+DEWLYNGGPY++IVLHFL+ +  YMGR+WELS+RLGMRPWI               LIYPIGQGSFSDGM LGIS
Sbjct:   65 EPVSGSLLYGNNIITATVVPTSAAIGLHLYPIWEAASLDEWLYNGGPYQMIVLHFLIAIYAYMGRQWELSYRLGMRPWIPVAFSAPVAAATAVLLIYPIGQGSFSDGMMLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_ANAVT (Photosystem Q(B) protein 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.289e-44
Identity = 81/113 (71.68%), Postives = 91/113 (80.53%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNII+  ++PTSAAIGLH YPIWEAAS+DEWLYNGGPY++IVLHFL+ +  YMGR+WELS+RLGMRPWI               LIYPIGQGSFSDGM LGIS
Sbjct:   65 EPVSGSLLYGNNIITATVVPTSAAIGLHLYPIWEAASLDEWLYNGGPYQMIVLHFLIAIYAYMGRQWELSYRLGMRPWIPVAFSAPVAAATAVLLIYPIGQGSFSDGMMLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNY3 (Photosystem Q(B) protein 1 OS=Synechocystis sp. (strain PCC 6803) GN=psbA1 PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 3.904e-44
Identity = 78/113 (69.03%), Postives = 92/113 (81.42%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EP++GSLLYGNNII+ A++P+S AIGLHFYPIWEA S+DEWLYNGGPY+LIV HFL+G+ CY+GR+WELS+RLGMRPWI               LIY IGQGSFSDG+PLGIS
Sbjct:   65 EPIAGSLLYGNNIITAAVVPSSNAIGLHFYPIWEAHSLDEWLYNGGPYQLIVFHFLIGIFCYLGRQWELSYRLGMRPWICVAYSAPVAAATATLLIYSIGQGSFSDGLPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_CYCTA (Photosystem Q(B) protein OS=Cycas taitungensis GN=psbA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.659e-44
Identity = 87/113 (76.99%), Postives = 89/113 (78.76%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV GSLLYGNNI  GAIIPTSAAIGLH YPIWEAASVD W Y  GPYELIV+H LLGVA YMGREWELSFRLGMRPWI              FLIYPIGQG+FSDGMPLGIS
Sbjct:   65 EPVPGSLLYGNNIRYGAIIPTSAAIGLHLYPIWEAASVDGWHYYVGPYELIVMHLLLGVARYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGNFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA3_SYNP2 (Photosystem Q(B) protein 3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=psbA3 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.659e-44
Identity = 79/113 (69.91%), Postives = 92/113 (81.42%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNII+ A++P+S AIGLHFYPIW+AA++DEWLYNGGPY+LIV HFLLG+  YMGREWELS+RLGMRPWI               L+Y IGQGSFSDG+PLGIS
Sbjct:   65 EPVAGSLLYGNNIITAAVVPSSNAIGLHFYPIWDAANLDEWLYNGGPYQLIVFHFLLGIFSYMGREWELSYRLGMRPWIAVAYSAPVAAATAVLLVYSIGQGSFSDGLPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_HETPY (Photosystem Q(B) protein OS=Heterocapsa pygmaea GN=psbA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.136e-43
Identity = 77/113 (68.14%), Postives = 89/113 (78.76%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+G+LLYGNNIISGA+IP+S AIG+HFYP+WEA   DEWLYNGG Y+ +VLHF+LG   YMGREWE +FRLGMRPWI              F++YPIGQGSFSDGMPLGIS
Sbjct:   69 EPVAGALLYGNNIISGAVIPSSNAIGVHFYPVWEALGFDEWLYNGGTYQFVVLHFILGAGAYMGREWEFAFRLGMRPWIFVAFSAPLVAASAVFIVYPIGQGSFSDGMPLGIS 181
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_HETTR (Photosystem Q(B) protein OS=Heterocapsa triquetra GN=psbA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.484e-43
Identity = 77/113 (68.14%), Postives = 88/113 (77.88%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+G+LLYGNNIISGA+IP+S AIG+HFYP+WEA   DEWLYNGG Y+ +VLHF+ G   YMGREWE SFRLGMRPWI              F++YPIGQGSFSDGMPLGIS
Sbjct:   69 EPVAGALLYGNNIISGAVIPSSNAIGVHFYPVWEALGFDEWLYNGGTYQFVVLHFIFGAGAYMGREWEFSFRLGMRPWIFVAFSAPLVAASAVFIVYPIGQGSFSDGMPLGIS 181
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_HETNI (Photosystem Q(B) protein OS=Heterocapsa niei GN=psbA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.484e-43
Identity = 77/113 (68.14%), Postives = 89/113 (78.76%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+G+LLYGNNIISGA+IP+S AIG+HFYP+WEA   DEWLYNGG Y+ +VLHF+LG   YMGREWE +FRLGMRPWI              F++YPIGQGSFSDGMPLGIS
Sbjct:   68 EPVAGALLYGNNIISGAVIPSSNAIGVHFYPVWEALGFDEWLYNGGTYQFVVLHFILGAGAYMGREWEFAFRLGMRPWIFVAFSAPLVAASAVFVVYPIGQGSFSDGMPLGIS 180
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_SYNJA (Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=psbA2 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.484e-43
Identity = 78/113 (69.03%), Postives = 92/113 (81.42%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV GSLL GNN+IS A++PTSAAI LHFYPIWEAAS++EWLYNGGPY+LIV HFL+GV CY+GR+WELS+RLGMRPWI               L+YPIGQGSFS+G+PLGI+
Sbjct:   68 EPVIGSLLGGNNLISAAVVPTSAAIALHFYPIWEAASLEEWLYNGGPYQLIVFHFLIGVWCYLGRQWELSYRLGMRPWIAVAFSAPAAAATAVLLVYPIGQGSFSEGLPLGIA 180
The following BLAST results are available for this feature:
BLAST of CB322093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PSBA2_SYNEN1.027e-4470.80Photosystem Q(B) protein 2 OS=Synechococcus elonga... [more]
PSBA3_ANASP2.289e-4471.68Photosystem Q(B) protein 3 OS=Anabaena sp. (strain... [more]
PSBA1_ANAVT2.289e-4471.68Photosystem Q(B) protein 1 OS=Anabaena variabilis ... [more]
PSBA1_SYNY33.904e-4469.03Photosystem Q(B) protein 1 OS=Synechocystis sp. (s... [more]
PSBA_CYCTA6.659e-4476.99Photosystem Q(B) protein OS=Cycas taitungensis GN=... [more]
PSBA3_SYNP26.659e-4469.91Photosystem Q(B) protein 3 OS=Synechococcus sp. (s... [more]
PSBA_HETPY1.136e-4368.14Photosystem Q(B) protein OS=Heterocapsa pygmaea GN... [more]
PSBA_HETTR1.484e-4368.14Photosystem Q(B) protein OS=Heterocapsa triquetra ... [more]
PSBA_HETNI1.484e-4368.14Photosystem Q(B) protein OS=Heterocapsa niei GN=ps... [more]
PSBA2_SYNJA1.484e-4369.03Photosystem Q(B) protein 2 OS=Synechococcus sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionEST0201 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB017 similar to photosystem II protein D1 (acc# AAM12551), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322093 ID=CB322093; Name=CB322093; organism=Citrus sinensis; type=EST; length=343bp
GTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGT
GCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATG
GGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGC
TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG
TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA
TTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCG
GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGG
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