CB322093

Overview
NameCB322093
Unique NameCB322093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA4_ANAVT (Photosystem Q(B) protein 6 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psbA5 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.938e-43
Identity = 77/113 (68.14%), Postives = 92/113 (81.42%), Query Frame = 3
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EP+ GSL+ GNN+I+ A++PTSAAIGLHFYPIWEAAS+DEWLYNGGPY+LIVLHFL+G+ C +GR WELS+RLGMRPWI               L+YPIGQGSFSDG+PLGI+
Sbjct:   68 EPIMGSLMDGNNLITAAVVPTSAAIGLHFYPIWEAASMDEWLYNGGPYQLIVLHFLIGIWCLLGRFWELSYRLGMRPWIAVAYSAPVIAATSVLLVYPIGQGSFSDGLPLGIA 180          
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_HETRO (Photosystem Q(B) protein OS=Heterocapsa rotundata GN=psbA PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.640e-42
Identity = 75/113 (66.37%), Postives = 88/113 (77.88%), Query Frame = 3
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+G+LLYGNNIISGA+IP+S AIG+HFYP+WEA   DEWLYNGG Y+ +VLHF+ G   +MGREWE +FRLGMRPWI              F++YPIGQGSFSDGMPLGIS
Sbjct:   69 EPVAGALLYGNNIISGAVIPSSNAIGVHFYPVWEALGFDEWLYNGGTYQFVVLHFIFGAGAWMGREWEFAFRLGMRPWIFVAFSAPLVASCAVFVVYPIGQGSFSDGMPLGIS 181          
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_AMPOP (Photosystem Q(B) protein OS=Amphidinium operculatum GN=psbA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.772e-42
Identity = 75/112 (66.96%), Postives = 88/112 (78.57%), Query Frame = 3
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGI 338
            EPV+GSL+YGNNIISGA+IP+S AIG+HFYP+WE+  +DEWLYNGG Y+ +V HF LGV  +MGREWE S+RLGMRPWI              F+IYPIGQGSFSDGMPLGI
Sbjct:   61 EPVAGSLIYGNNIISGAVIPSSNAIGVHFYPLWESLGLDEWLYNGGTYQFVVFHFFLGVCGWMGREWEFSYRLGMRPWIFVAFSAPIAAAAAVFIIYPIGQGSFSDGMPLGI 172          
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_AMPCA (Photosystem Q(B) protein OS=Amphidinium carterae GN=psbA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.772e-42
Identity = 75/112 (66.96%), Postives = 88/112 (78.57%), Query Frame = 3
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGI 338
            EPV+GSL+YGNNIISGA+IP+S AIG+HFYP+WE+  +DEWLYNGG Y+ +V HF LGV  +MGREWE S+RLGMRPWI              F+IYPIGQGSFSDGMPLGI
Sbjct:   61 EPVAGSLIYGNNIISGAVIPSSNAIGVHFYPLWESLGLDEWLYNGGTYQFVVFHFFLGVCGWMGREWEFSYRLGMRPWIFVAFSAPIAAAAAVFIIYPIGQGSFSDGMPLGI 172          
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_ALETA (Photosystem Q(B) protein OS=Alexandrium tamarense GN=psbA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.813e-41
Identity = 76/113 (67.26%), Postives = 90/113 (79.65%), Query Frame = 3
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNIISGA+IP+S AIG+HFYP WE+A++ EWLYNGG Y+ +VLHF+ GV+ +MGREWE SFRLGMRPWI              F+ YPIGQGSFSDGMPLG+S
Sbjct:   67 EPVAGSLLYGNNIISGAVIPSSNAIGVHFYPEWESATLLEWLYNGGTYQFVVLHFIGGVSSWMGREWEFSFRLGMRPWIYLAFSAPLVAATAVFVFYPIGQGSFSDGMPLGVS 179          
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PROMC (Photosystem Q(B) protein OS=Prorocentrum micans GN=psbA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.005e-40
Identity = 75/113 (66.37%), Postives = 88/113 (77.88%), Query Frame = 3
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLY NNII+GA+IP+S AIG+HFYP+WEA S +EWLYNGG Y+ +VLHFL  V  ++GRE+E SFRLGMRPWI              F++YPIGQGSFSDGMPLGIS
Sbjct:   64 EPVSGSLLYSNNIITGAVIPSSNAIGVHFYPVWEAISNNEWLYNGGTYQFVVLHFLAAVLAWLGREYEYSFRLGMRPWIYLAFSAPVVAASAVFVVYPIGQGSFSDGMPLGIS 176          
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_ACAM1 (Photosystem Q(B) protein 1 OS=Acaryochloris marina (strain MBIC 11017) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.420e-40
Identity = 71/113 (62.83%), Postives = 89/113 (78.76%), Query Frame = 3
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EP+  SLL G+N+I+ A+IPTSAAIGLH YP+WEA S+DEWLYNGGPY+LI+LHFL+ +  Y+GR+WELS+RLGMRPWI               L+YP+GQGSFS+G+PLGIS
Sbjct:   68 EPIISSLLGGSNVITAAVIPTSAAIGLHLYPLWEATSMDEWLYNGGPYQLIILHFLIAIWTYLGRQWELSYRLGMRPWIAMAFSAPVAAATAVLLVYPMGQGSFSEGLPLGIS 180          
The following BLAST results are available for this feature:
BLAST of CB322093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PSBA4_ANAVT1.938e-4368.14Photosystem Q(B) protein 6 OS=Anabaena variabilis ... [more]
PSBA_HETRO1.640e-4266.37Photosystem Q(B) protein OS=Heterocapsa rotundata ... [more]
PSBA_AMPOP4.772e-4266.96Photosystem Q(B) protein OS=Amphidinium operculatu... [more]
PSBA_AMPCA4.772e-4266.96Photosystem Q(B) protein OS=Amphidinium carterae G... [more]
PSBA_ALETA1.813e-4167.26Photosystem Q(B) protein OS=Alexandrium tamarense ... [more]
PSBA_PROMC2.005e-4066.37Photosystem Q(B) protein OS=Prorocentrum micans GN... [more]
PSBA1_ACAM13.420e-4062.83Photosystem Q(B) protein 1 OS=Acaryochloris marina... [more]

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Properties
Property NameValue
Genbank descriptionEST0201 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB017 similar to photosystem II protein D1 (acc# AAM12551), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322093 ID=CB322093; Name=CB322093; organism=Citrus sinensis; type=EST; length=343bp
GTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGT
GCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATG
GGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGC
TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG
TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA
TTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCG
GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGG
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