CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_NITMU (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dxs PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.344e-50
Identity = 103/196 (52.55%), Postives = 139/196 (70.92%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA +G+KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DRAGLVGADGPTH G+FD+T++ C+PN+ VMAPSDE E   M+ TA  + + P+  R+PRG+G G       +  PL  G+G I  EG  +A+L +GS++Q C+ AA     ++++ TVA+ RF KPLD DL+  LA  HE+L+TVEE +V GG GS
Sbjct:  373 LACDGLKPVVAIYSTFLQRAYDQLIHDVAIQNLPVVFAIDRAGLVGADGPTHAGSFDLTYLRCIPNITVMAPSDENECRQMLYTAFQM-NTPAAVRYPRGSGSGVAQQKEMQMLPL--GRGEIRREGAEIALLAFGSMLQPCLEAA-----EELNATVANMRFVKPLDDDLVASLAANHELLVTVEENTVMGGAGS 560          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ALHEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.755e-50
Identity = 107/196 (54.59%), Postives = 137/196 (69.90%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA E VKP  AIYS+FLQRGYDQ+VHDV LQ LPV FA+DRAGLVGADGPTH G+FD++++ C+PNM + APSDEAE   +++T     D P   R+PRG+G GA LP  +   PL IGKG     G R+A+L +G++V   +  A  L      +TVAD RF +PLD  LIR+LA+ H++L+TVEE +V GG GS
Sbjct:  380 LACESVKPVLAIYSTFLQRGYDQLVHDVALQNLPVLFAVDRAGLVGADGPTHHGSFDLSYLRCVPNMTIAAPSDEAECWRLLST-GYHHDGPFAVRYPRGSGPGAALPEADL-DPLAIGKGVCRRRGRRIAVLAFGTLVVPALAVAEAL-----DLTVADMRFVRPLDEALIRELADTHDLLVTVEENAVAGGAGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHEB8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella baltica (strain OS185) GN=dxs PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.293e-50
Identity = 103/195 (52.82%), Postives = 133/195 (68.21%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG KP  AIYS+FLQR YDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    D  PS  R+PRG   GA        T L IGKG I   G R+AIL +G+     +LA+ +  ++ +  TV D RF KPLD DL++++A  HE+L+TVEE ++ GG G+
Sbjct:  381 ACEGFKPVVAIYSTFLQRAYDQLIHDVALQQLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGCATGAT--QVEAMTALPIGKGVIKRVGKRIAILNFGT-----LLASALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHEVLVTVEENAIMGGAGA 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHEB2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella baltica (strain OS223) GN=dxs PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.293e-50
Identity = 103/195 (52.82%), Postives = 133/195 (68.21%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG KP  AIYS+FLQR YDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    D  PS  R+PRG   GA        T L IGKG I   G R+AIL +G+     +LA+ +  ++ +  TV D RF KPLD DL++++A  HE+L+TVEE ++ GG G+
Sbjct:  381 ACEGFKPVVAIYSTFLQRAYDQLIHDVALQQLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGCATGAT--QVEAMTALPIGKGVIKRVGKRIAILNFGT-----LLASALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHEVLVTVEENAIMGGAGA 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_PROMP (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxs PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.293e-50
Identity = 101/196 (51.53%), Postives = 140/196 (71.43%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            ++ +G+KP  AIYS+FLQR +DQ++HDV +Q LPV F +DRAG+VGADGPTH G +DI++M  +PN V+MAP DEAEL  M+ T ++    P+  R PRG+G+G V   +    PL+IG+G IL EGD V I+ YGS+VQ     AN+LK++ IS  + +ARF +PLD DLI  L  + + ++T+EEG+ VGGFGS
Sbjct:  380 MSCDGLKPVVAIYSTFLQRAFDQLIHDVGIQNLPVSFVLDRAGIVGADGPTHQGQYDISYMRAIPNFVLMAPKDEAELQRMLIT-SINYKGPTALRIPRGSGLG-VAVMDEGWEPLKIGEGEILEEGDDVLIIAYGSMVQSATETANLLKNRGISACIINARFVRPLDQDLIIPLVRKLKKVVTMEEGTLVGGFGS 573          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_VIBHB (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=dxs PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.911e-50
Identity = 103/192 (53.65%), Postives = 136/192 (70.83%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGG 576
            +A  G  P  AIYS+FLQRGYDQ++HDV +  LPV FA+DRAGLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T       PS  R+PRG+G+G  +      T LEIGKGRI+ +G++VAIL +G+ +   + AA     ++++ TVAD RF KPLD  LIRQLA EH++L+T+EE ++ G
Sbjct:  380 MAIAGDHPIVAIYSTFLQRGYDQLIHDVAIMDLPVMFAIDRAGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGHK-HTGPSAVRYPRGSGMGTDI--EKDFTALEIGKGRIVRKGEKVAILSFGTFLGNALEAA-----ENLNATVADMRFVKPLDEALIRQLAAEHDVLVTLEENAIAG 563          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_RALME (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=dxs PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.911e-50
Identity = 106/201 (52.74%), Postives = 137/201 (68.16%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGS 585
            LA EG+KP  AIYS+FLQRGYDQ++HDV LQ LPV FA+DRAGLVGADG TH G +DI F+ C+PNM+VM P+DE E   ++ T A   D P+  R+PRG G+G    P  + T L +GKG I  E     G RVAI+ +GS+V   + AA     + +  TVA+ RF KPLD +L++QLA  H+ L+TVEEG ++GG GS
Sbjct:  380 LACEGLKPVVAIYSTFLQRGYDQLIHDVALQNLPVVFALDRAGLVGADGATHAGVYDIPFLRCIPNMMVMVPADENECRQLL-TTAFQQDCPTAVRYPRGAGVGVATQP--ELTALPVGKGEIRREGHARAGQRVAIMAFGSMVHPALTAA-----EQLDATVANMRFVKPLDVELVKQLAANHDFLVTVEEGATMGGAGS 572          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHESW (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sp. (strain W3-18-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.108e-50
Identity = 102/195 (52.31%), Postives = 133/195 (68.21%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG KP  AIYS+FLQRGYDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    +  PS  R+PRG+  GA        T L IGKG I   G R+A+L +G+ +   + AA+     ++  TV D RF KPLD +L+ ++A  H+IL+TVEE ++ GG GS
Sbjct:  381 ACEGYKPVVAIYSTFLQRGYDQLIHDVALQRLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYNAGPSAVRYPRGSATGAT--QVEAMTALPIGKGVIKRVGKRIALLNFGTTLASALTAAD-----NLDATVVDMRFVKPLDAELVTEMAQTHDILVTVEENAIMGGAGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHEPC (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=dxs PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.108e-50
Identity = 102/195 (52.31%), Postives = 133/195 (68.21%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG KP  AIYS+FLQRGYDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    +  PS  R+PRG+  GA        T L IGKG I   G R+A+L +G+ +   + AA+     ++  TV D RF KPLD +L+ ++A  H+IL+TVEE ++ GG GS
Sbjct:  381 ACEGYKPVVAIYSTFLQRGYDQLIHDVALQRLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYNAGPSAVRYPRGSATGAT--QVEAMTALPIGKGVIKRVGKRIALLNFGTTLASALTAAD-----NLDATVVDMRFVKPLDAELVTEMAQTHDILVTVEENAIMGGAGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHELP (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dxs PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.108e-50
Identity = 102/195 (52.31%), Postives = 132/195 (67.69%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG KP  AIYS+FLQRGYDQ++HDV LQKLPV FA+DR G+VG DGPTH GAFD+++M  +PNMV+MAPSDE E   M+ T    ++ P+  R+PRG+  G   P     T  EIGKG I  EG ++AIL +G+ +     AA  L       T+AD RF KPLD +L++QLA  H++L+TVEE ++ GG GS
Sbjct:  381 ACEGYKPVLAIYSTFLQRGYDQLIHDVALQKLPVIFAIDRGGIVGPDGPTHQGAFDLSYMRAIPNMVIMAPSDENECRQMLYTGYCYNEGPTAIRYPRGSATGE--PQVETMTAYEIGKGLIKREGKKIAILNFGTTLASASQAAEAL-----DATLADMRFVKPLDVELVKQLATSHDLLVTVEENAIMGGAGS 568          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_NITMU1.344e-5052.551-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_ALHEH1.755e-5054.591-deoxy-D-xylulose-5-phosphate synthase OS=Alkalil... [more]
DXS_SHEB82.293e-5052.821-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEB22.293e-5052.821-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_PROMP2.293e-5051.531-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_VIBHB3.911e-5053.651-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_RALME3.911e-5052.741-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_SHESW5.108e-5052.311-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEPC5.108e-5052.311-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHELP5.108e-5052.311-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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