CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_YERPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pseudotuberculosis GN=dxs PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.712e-50
Identity = 103/196 (52.55%), Postives = 139/196 (70.92%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DR GLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T     + P+  R+PRGNG GAVL P      L IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS
Sbjct:  380 LAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQNLPVLFAIDRGGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYT-GYHHNGPAAVRYPRGNGTGAVLEPLEM---LPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGS 566          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_YERPB (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=dxs PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.712e-50
Identity = 103/196 (52.55%), Postives = 139/196 (70.92%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DR GLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T     + P+  R+PRGNG GAVL P      L IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS
Sbjct:  380 LAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQNLPVLFAIDRGGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYT-GYHHNGPAAVRYPRGNGTGAVLEPLEM---LPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGS 566          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_THIDA (1-deoxy-D-xylulose-5-phosphate synthase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=dxs PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.712e-50
Identity = 101/192 (52.60%), Postives = 133/192 (69.27%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGG 576
            LA EGVKP  AIYS+FLQR YDQ++HD+ LQ LPV  A+DRAGLVGADGPTH G+FD++F+ C+P++V+ APSDE E   +++T A + D P+  R+PRG G GA + P  +  P+EIGKG     G  VA+L +GS+V   + AA  L       TVAD RF KPLD DL+ +LA  H +L+T+EE +V G
Sbjct:  374 LACEGVKPVVAIYSTFLQRAYDQLIHDIALQNLPVTLAIDRAGLVGADGPTHAGSFDLSFLRCVPDLVIAAPSDENECRRLLST-AFLHDGPAAVRYPRGCGTGAAIEPGLE--PVEIGKGVCRRRGRDVALLAFGSLVAPALTAAERL-----DATVADMRFVKPLDVDLVGELAAGHRLLVTLEENAVAG 557          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHEFN (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella frigidimarina (strain NCIMB 400) GN=dxs PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.138e-49
Identity = 98/195 (50.26%), Postives = 134/195 (68.72%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A  G+KP  AIYS+FLQRGYDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM C+PNM++MAPSDE E   M+ T     D P+  R+PRG   GA     +  T + IGKG +  +G ++AI+ +G+ ++    AA     + +  T+AD RF KPLD  L+ QLAN H++++TVEE ++ GG GS
Sbjct:  381 ACAGLKPVVAIYSTFLQRGYDQLIHDVALQRLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMIIMAPSDENECRQMLYTGYCYQDGPTAVRYPRGFATGA--EQIDTMTMIPIGKGVLTRQGQKIAIVNFGTTLEAATDAA-----EKLDATIADMRFVKPLDLGLLEQLANSHDVIVTVEENAIMGGAGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_PROM4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=dxs PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.138e-49
Identity = 102/196 (52.04%), Postives = 134/196 (68.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A +G++P  AIYS+FLQR YDQ++HDV +QKLPV F +DRAG+VGADGPTH G +DI+++  +PN  VMAP DEAEL  M+ T  + +D P   R PRG+G G  L       PL+IG+G IL +GD + IL YGS+V   V  A +LK   IS TV +ARF +PLD  LI  LA     ++T+EEG++ GGFGS
Sbjct:  380 MACDGLRPVVAIYSTFLQRAYDQLIHDVGIQKLPVTFVLDRAGIVGADGPTHQGQYDISYLRSVPNFTVMAPKDEAELQRMLVT-CLENDGPCALRIPRGSGEGVTLMEEG-WEPLKIGRGEILEDGDDLLILAYGSMVTPAVQTAELLKQAGISSTVVNARFLRPLDQALIHPLARRIGKVVTIEEGALGGGFGS 573          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_PHOPR (1-deoxy-D-xylulose-5-phosphate synthase OS=Photobacterium profundum GN=dxs PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.138e-49
Identity = 102/196 (52.04%), Postives = 139/196 (70.92%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A  G  P  AIYS+FLQRGYDQ++HDV + +LPV FA+DR GLVGADG TH GAFD++FM C+PN+V+MAPSDE E   M+ T       PS  R+PRGNG+GA +    + T LEIGKG I  +G+++AIL +G++++  + AA     + ++ TVAD RF KPLD +LI +LA  H++L+TVEE ++ GG GS
Sbjct:  380 MAIGGYNPIVAIYSTFLQRGYDQLIHDVAIMELPVMFAIDRGGLVGADGQTHQGAFDLSFMRCIPNIVIMAPSDENECRQMLYTGHK-HQGPSAVRYPRGNGLGAEI--QKEMTALEIGKGIIRRQGEKIAILNFGTMLEYALEAA-----EKLNATVADMRFVKPLDEELILELAANHDVLVTVEENAIAGGAGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ENTS8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=dxs PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.138e-49
Identity = 102/196 (52.04%), Postives = 133/196 (67.86%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P+MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G++VA+L +G+++ +   AA  L     + T+ D RF KPLD  LI +LA  HE L+T+EE +V GG GS
Sbjct:  380 LAIGGYKPVVAIYSTFLQRAYDQVIHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPDMVIMTPSDENECRQMLFTGYHYNDGPSAVRYPRGNALGVTLEPLQK---LPIGKGVVKRHGEKVALLNFGTLLPEATQAAEAL-----NATLVDMRFVKPLDEALIMELAGRHEALVTIEENAVMGGAGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CUPTR (1-deoxy-D-xylulose-5-phosphate synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=dxs PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.138e-49
Identity = 108/201 (53.73%), Postives = 137/201 (68.16%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA EG+KP  AIYS+FLQRGYDQ++HDV LQ LPV FA+DRAGLVGADG TH GA+DI ++ C+PNM+VM PSDE E   ++ T A   D P+  R+PRG+G GA +  +    P+ +GKG +  E     G RV  L +GS+VQ  + AA  L       TVAD RF KPLD  L+++LA +H+ L+TVEEGSV GG GS
Sbjct:  380 LACEGLKPVVAIYSTFLQRGYDQLIHDVALQNLPVVFALDRAGLVGADGATHAGAYDIAYLRCIPNMMVMTPSDENECRQLL-TTAFQQDCPTAVRYPRGSGPGAAIAADL--APVPVGKGVVRREAGARAGHRVGFLAFGSMVQPALGAAEAL-----DATVADMRFVKPLDVALVKRLAADHDYLVTVEEGSVMGGAGS 572          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_VIBSL (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio splendidus (strain LGP32) GN=dxs PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.486e-49
Identity = 104/198 (52.53%), Postives = 136/198 (68.69%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME------GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGG 576
            +A  G KP  AIYS+FLQRGYDQ++HDV +  LPV FA+DRAGLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T       PS  R+PRGNG+G  +   ++ T LEIGKGRI+ E      G +VAIL +G+ ++  +  A+      I  TVAD RF KPLD  LI+QLA +H++L+T+EE ++ G
Sbjct:  380 MAIAGDKPIVAIYSTFLQRGYDQLIHDVAIMDLPVMFAIDRAGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGHQ-HTGPSAVRYPRGNGMGTEI--QSEFTALEIGKGRIVRESKKAKDGSKVAILSFGTFLESALQTADA-----IDATVADMRFVKPLDEALIKQLAADHDVLVTIEENAIAG 569          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_PROMH (1-deoxy-D-xylulose-5-phosphate synthase OS=Proteus mirabilis (strain HI4320) GN=dxs PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.486e-49
Identity = 101/196 (51.53%), Postives = 136/196 (69.39%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DR G+VGADG TH GAFD++F+ C+PNM++MAPSDE E   M+ T     + P   R+PRG+G+GA L P ++   L IGKG I  +G  +AIL +G+++ + +  A     + +  TVAD RF KPLD +LI  LA +H+IL+T+EE ++ GG GS
Sbjct:  380 LAIGGYKPIVAIYSTFLQRAYDQVIHDVAIQKLPVLFAIDRGGIVGADGQTHQGAFDLSFLRCIPNMIIMAPSDENECRQMLHTGYHYQEGPVAVRYPRGSGVGAPLQPLSE---LPIGKGIIRRQGKSIAILNFGTLLPEALDVA-----EKLDATVADMRFIKPLDKELILSLAKQHDILVTLEENAIMGGAGS 567          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_YERPS8.712e-5052.551-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_YERPB8.712e-5052.551-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_THIDA8.712e-5052.601-deoxy-D-xylulose-5-phosphate synthase OS=Thiobac... [more]
DXS_SHEFN1.138e-4950.261-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_PROM41.138e-4952.041-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_PHOPR1.138e-4952.041-deoxy-D-xylulose-5-phosphate synthase OS=Photoba... [more]
DXS_ENTS81.138e-4952.041-deoxy-D-xylulose-5-phosphate synthase OS=Enterob... [more]
DXS_CUPTR1.138e-4953.731-deoxy-D-xylulose-5-phosphate synthase OS=Cupriav... [more]
DXS_VIBSL1.486e-4952.531-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_PROMH1.486e-4951.531-deoxy-D-xylulose-5-phosphate synthase OS=Proteus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
back to top