CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_EDWI9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Edwardsiella ictaluri (strain 93-146) GN=dxs PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.486e-49
Identity = 104/196 (53.06%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G  P  AIYSSFLQR YDQV+HDV +Q+LPV FA+DR G+VGADG TH GAFD++F+ C+PN+V+M PSDE E   M+ T     + PS  R+PRG G GA L P      L IGKG +   G+R+AIL +GS++ Q + AA  L     + +VAD RF KPLD  L+R LA +HE L+T+EE +V GG GS
Sbjct:  380 LAIGGYHPVVAIYSSFLQRAYDQVIHDVAIQRLPVLFAIDRGGIVGADGQTHQGAFDLSFLRCIPNLVIMTPSDENECRQMLQTGYEYREGPSAVRYPRGTGTGAPLTPPQ---ALPIGKGVLRRRGERIAILNFGSLLPQALEAAERL-----NASVADMRFVKPLDDALVRSLAEQHEYLVTLEENAVMGGAGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHEPW (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=dxs PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.941e-49
Identity = 103/195 (52.82%), Postives = 133/195 (68.21%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG  P  AIYS+FLQRGYDQ++HDV LQKLPV FA+DR G+VGADGPTH GAFD++FM  +PNMV+MAPSDE E   M+ T       P+  R+PRG+  GA        T L IGKG I  +G ++AIL +G+      LA +++ ++    TVAD RF KPLD DLI++LA  H++L+TVEE ++ GG GS
Sbjct:  381 ACEGYTPVVAIYSTFLQRGYDQLIHDVALQKLPVVFAIDRGGIVGADGPTHQGAFDLSFMRTVPNMVIMAPSDENECRQMLYTGYCYKAGPTAVRYPRGSATGA--KQVETMTALPIGKGLIKRQGQKIAILNFGT-----TLANSLVAAEAFDATVADMRFVKPLDVDLIKELAETHDVLVTVEENAIMGGAGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SYNAS (1-deoxy-D-xylulose-5-phosphate synthase OS=Syntrophus aciditrophicus (strain SB) GN=dxs PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.535e-49
Identity = 101/196 (51.53%), Postives = 136/196 (69.39%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA+EG+ P  AIYSSFLQR YDQ++HDV LQ LPV FA+DRAG VG DGPTH G FD++++  +PNMVVMAP DE EL HM+ T AV   +P+  R+PRG+G+G  +  +++   LE+GKG +L EG  +AIL  G  V   + AA  L+ + I  TV +ARF KPLD +L+ ++    + ++TVEE  + GGFGS
Sbjct:  393 LATEGILPVVAIYSSFLQRAYDQILHDVCLQNLPVVFALDRAGFVGEDGPTHHGLFDLSYLRSIPNMVVMAPKDENELQHMLHT-AVACGKPAAVRYPRGSGVGVTM--DSQPFSLELGKGEVLCEGGSLAILAVGDPVHPALTAAVQLREEGIYATVVNARFVKPLDRELLLRIVRSFKKILTVEENVLTGGFGS 585          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SYNP6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dxs PE=3 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 3.311e-49
Identity = 103/196 (52.55%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A +G++P  AIYS+FLQR +DQV+HDV +QKLPV F +DRAG+VGADGPTH G +DI ++  +PNMV+MAP DEAEL  M+ T  +  D P   RFPRGNGIG  LP       L IGK   L +GD + +L YGS+V   +  A +L    IS TV +ARF KPLD +LI  LA +   ++T EEG + GGFGS
Sbjct:  380 MACDGMRPVVAIYSTFLQRAFDQVIHDVCIQKLPVFFCLDRAGIVGADGPTHQGMYDIAYLRLIPNMVLMAPKDEAELQRMLVT-GIEYDGPIAMRFPRGNGIGVPLPEEG-WESLPIGKAEQLRQGDDLLMLAYGSMVYPALQTAELLNEHGISATVINARFAKPLDEELIVPLARQIGKVVTFEEGCLPGGFGS 573          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SYNE7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=dxs PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.311e-49
Identity = 103/196 (52.55%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A +G++P  AIYS+FLQR +DQV+HDV +QKLPV F +DRAG+VGADGPTH G +DI ++  +PNMV+MAP DEAEL  M+ T  +  D P   RFPRGNGIG  LP       L IGK   L +GD + +L YGS+V   +  A +L    IS TV +ARF KPLD +LI  LA +   ++T EEG + GGFGS
Sbjct:  380 MACDGMRPVVAIYSTFLQRAFDQVIHDVCIQKLPVFFCLDRAGIVGADGPTHQGMYDIAYLRLIPNMVLMAPKDEAELQRMLVT-GIEYDGPIAMRFPRGNGIGVPLPEEG-WESLPIGKAEQLRQGDDLLMLAYGSMVYPALQTAELLNEHGISATVINARFAKPLDEELIVPLARQIGKVVTFEEGCLPGGFGS 573          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_METFK (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=dxs PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.311e-49
Identity = 100/196 (51.02%), Postives = 138/196 (70.41%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A +G+KP  AIYS+FLQR YDQ +HD+ LQ LPV FA+DRAGLVGADGPTH G+FD++++ C+PN+++MAPSDE E   M+ T A + D PS  R+PRG G GA +  + +  P  IGKG +  +G  VAIL +GS++   + AA     + +  TVA+ RF KPLD +LI QLA+ H +++TVEE +V GG G+
Sbjct:  373 MACDGLKPVVAIYSTFLQRAYDQFIHDIALQNLPVMFAIDRAGLVGADGPTHAGSFDLSYLRCIPNIIIMAPSDENECRQMLYT-AYLHDGPSAVRYPRGGGPGATITRDMQLLP--IGKGELRRQGSWVAILAFGSMLAPALEAA-----ETLDATVANMRFVKPLDANLINQLASSHTLIVTVEENAVMGGAGA 560          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ENT38 (1-deoxy-D-xylulose-5-phosphate synthase OS=Enterobacter sp. (strain 638) GN=dxs PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.311e-49
Identity = 100/196 (51.02%), Postives = 134/196 (68.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++F+ C+P+MVVM PSDE E   M+ T     D PS  R+PRGN +G  L P  K   + IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A+ HE+LIT+EE ++ GG GS
Sbjct:  380 LAIGGYKPIVAIYSTFLQRAYDQVIHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSFLRCVPDMVVMTPSDENECRQMLFTGYHYQDGPSAVRYPRGNAVGVELEPLTK---MPIGKGIVKRHGEKLAILNFGTLMPEAAKVA-----ESMNATLVDMRFVKPLDETLILEMASRHEVLITLEENAIMGGAGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_YERPY (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=dxs PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.324e-49
Identity = 102/196 (52.04%), Postives = 138/196 (70.41%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DR GLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T     + P+  R+PRGNG  AVL P      L IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS
Sbjct:  380 LAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQNLPVLFAIDRGGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYT-GYHHNGPAAVRYPRGNGTSAVLEPLEM---LPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGS 566          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_YERPP (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pestis (strain Pestoides F) GN=dxs PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.324e-49
Identity = 102/196 (52.04%), Postives = 138/196 (70.41%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DR GLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T     + P+  R+PRGNG  AVL P      L IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS
Sbjct:  380 LAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQNLPVLFAIDRGGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYT-GYHHNGPAAVRYPRGNGTSAVLEPLEM---LPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGS 566          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_YERPN (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=dxs PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.324e-49
Identity = 102/196 (52.04%), Postives = 138/196 (70.41%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DR GLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T     + P+  R+PRGNG  AVL P      L IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS
Sbjct:  380 LAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQNLPVLFAIDRGGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYT-GYHHNGPAAVRYPRGNGTSAVLEPLEM---LPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGS 566          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_EDWI91.486e-4953.061-deoxy-D-xylulose-5-phosphate synthase OS=Edwards... [more]
DXS_SHEPW1.941e-4952.821-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SYNAS2.535e-4951.531-deoxy-D-xylulose-5-phosphate synthase OS=Syntrop... [more]
DXS_SYNP63.311e-4952.551-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SYNE73.311e-4952.551-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_METFK3.311e-4951.021-deoxy-D-xylulose-5-phosphate synthase OS=Methylo... [more]
DXS_ENT383.311e-4951.021-deoxy-D-xylulose-5-phosphate synthase OS=Enterob... [more]
DXS_YERPY4.324e-4952.041-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_YERPP4.324e-4952.041-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_YERPN4.324e-4952.041-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
back to top