CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_YERPG (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=dxs PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.324e-49
Identity = 102/196 (52.04%), Postives = 138/196 (70.41%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DR GLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T     + P+  R+PRGNG  AVL P      L IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS
Sbjct:  380 LAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQNLPVLFAIDRGGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYT-GYHHNGPAAVRYPRGNGTSAVLEPLEM---LPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGS 566          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_YERPE (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pestis GN=dxs PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.324e-49
Identity = 102/196 (52.04%), Postives = 138/196 (70.41%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DR GLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T     + P+  R+PRGNG  AVL P      L IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS
Sbjct:  380 LAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQNLPVLFAIDRGGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYT-GYHHNGPAAVRYPRGNGTSAVLEPLEM---LPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGS 566          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_YERPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=dxs PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.324e-49
Identity = 102/196 (52.04%), Postives = 138/196 (70.41%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DR GLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T     + P+  R+PRGNG  AVL P      L IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS
Sbjct:  380 LAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQNLPVLFAIDRGGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYT-GYHHNGPAAVRYPRGNGTSAVLEPLEM---LPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGS 566          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_YERP3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=dxs PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.324e-49
Identity = 102/196 (52.04%), Postives = 138/196 (70.41%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DR GLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T     + P+  R+PRGNG  AVL P      L IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS
Sbjct:  380 LAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQNLPVLFAIDRGGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYT-GYHHNGPAAVRYPRGNGTSAVLEPLEM---LPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGS 566          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_KLEP3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Klebsiella pneumoniae (strain 342) GN=dxs PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.324e-49
Identity = 102/196 (52.04%), Postives = 133/196 (67.86%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA    KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++F+ C+P+MVVM PSDE E   M+ T     D P   R+PRG+G GA L P      L IGKG +  +G+++AIL +G+++ +    A+ L     + T+ D RF KPLDT LI QLA EH+ L+T+EE ++ GG GS
Sbjct:  380 LAIGDYKPVVAIYSTFLQRAYDQVIHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSFLRCIPDMVVMTPSDENECRQMLHTGYHYSDGPCAVRYPRGSGTGATLEPL---ASLPIGKGVVKRQGEKIAILNFGTLLPEAAAVADKL-----NATLVDMRFVKPLDTALILQLAGEHDALVTLEENAIMGGAGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SERP5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Serratia proteamaculans (strain 568) GN=dxs PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.647e-49
Identity = 100/196 (51.02%), Postives = 133/196 (67.86%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQ++HDV +QKLPV FA+DR G+VGADG TH GAFD++FM C+P MV+M PSDE E   M+ T    ++ PS  R+PRGNG GA L P N    L IGKG +  EG+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI +LA  H+ L+T+EE ++ GG GS
Sbjct:  380 LAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQKLPVMFAIDRGGIVGADGQTHQGAFDLSFMRCIPTMVIMTPSDENECRQMLYTGYHYNEGPSAVRYPRGNGTGAPLEPLNS---LPIGKGVVRREGEKLAILNFGTLLPEAAQVA-----ETLNATLVDMRFVKPLDEQLILELAASHDALVTLEENAIMGGAGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ACTPJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=dxs PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.647e-49
Identity = 99/196 (50.51%), Postives = 136/196 (69.39%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYSSFLQR YDQ++HDV +Q LPV FA+DRAG+VGADG TH GAFD++FM C+PNM +M PSDE E+  M+ TA  + + P+  R+PRGN  G  L P      LE+GKG+++ +G +VAIL +G ++ +  + A     +  + T+AD RF KPLD  L+ +LA+ HE+L+T+EE ++ GG GS
Sbjct:  377 LAIAGYKPVVAIYSSFLQRAYDQLIHDVAIQNLPVIFAIDRAGIVGADGQTHQGAFDVSFMRCIPNMTIMCPSDENEMRQMLYTAYRM-NTPTAVRYPRGNAQGVALAPMQ---ALEVGKGKLIQQGQKVAILNFGPLLNEARIVA-----EKHNYTLADMRFVKPLDEQLVAELADSHELLVTLEENAIQGGAGS 563          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ACTP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=dxs PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.647e-49
Identity = 99/196 (50.51%), Postives = 136/196 (69.39%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYSSFLQR YDQ++HDV +Q LPV FA+DRAG+VGADG TH GAFD++FM C+PNM +M PSDE E+  M+ TA  + + P+  R+PRGN  G  L P      LE+GKG+++ +G +VAIL +G ++ +  + A     +  + T+AD RF KPLD  L+ +LA+ HE+L+T+EE ++ GG GS
Sbjct:  377 LAIAGYKPVVAIYSSFLQRAYDQLIHDVAIQNLPVIFAIDRAGIVGADGQTHQGAFDVSFMRCIPNMTIMCPSDENEMRQMLYTAYRM-NTPTAVRYPRGNAQGVALAPMQ---ALEVGKGKLIQQGQKVAILNFGPLLNEARIVA-----EKHNYTLADMRFVKPLDEQLVAELADSHELLVTLEENAIQGGAGS 563          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ACTP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=dxs PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.647e-49
Identity = 99/196 (50.51%), Postives = 136/196 (69.39%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYSSFLQR YDQ++HDV +Q LPV FA+DRAG+VGADG TH GAFD++FM C+PNM +M PSDE E+  M+ TA  + + P+  R+PRGN  G  L P      LE+GKG+++ +G +VAIL +G ++ +  + A     +  + T+AD RF KPLD  L+ +LA+ HE+L+T+EE ++ GG GS
Sbjct:  377 LAIAGYKPVVAIYSSFLQRAYDQLIHDVAIQNLPVIFAIDRAGIVGADGQTHQGAFDVSFMRCIPNMTIMCPSDENEMRQMLYTAYRM-NTPTAVRYPRGNAQGVALAPMQ---ALEVGKGKLIQQGQKVAILNFGPLLNEARIVA-----EKHNYTLADMRFVKPLDEQLVAELADSHELLVTLEENAIQGGAGS 563          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_PROMT (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain NATL2A) GN=dxs PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 7.376e-49
Identity = 98/196 (50.00%), Postives = 133/196 (67.86%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            +A EG+KP  AIYS+FLQR YDQ++HD+ +Q LPV F +DRAG+VGADGPTH G +DI+++ C+PN  VMAP DE+EL  M+ T  +  + PS  R PRG+G GA L        LEIGK   L EG+ + I+GYGS+V   +  A +LK   ++ TV +ARF +PLD D I + A     ++T+EEG+ +GGFGS
Sbjct:  380 MACEGIKPVVAIYSTFLQRAYDQLIHDIGIQNLPVTFVLDRAGIVGADGPTHQGQYDISYLRCIPNFTVMAPKDESELQQMLVT-CINHNGPSALRIPRGSGEGAALMEEG-WESLEIGKAETLEEGENLLIIGYGSMVFPAIRTAAILKEFGVNSTVINARFIRPLDEDTIHEAAKRIGKVVTMEEGTLLGGFGS 573          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_YERPG4.324e-4952.041-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_YERPE4.324e-4952.041-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_YERPA4.324e-4952.041-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_YERP34.324e-4952.041-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_KLEP34.324e-4952.041-deoxy-D-xylulose-5-phosphate synthase OS=Klebsie... [more]
DXS_SERP55.647e-4951.021-deoxy-D-xylulose-5-phosphate synthase OS=Serrati... [more]
DXS_ACTPJ5.647e-4950.511-deoxy-D-xylulose-5-phosphate synthase OS=Actinob... [more]
DXS_ACTP75.647e-4950.511-deoxy-D-xylulose-5-phosphate synthase OS=Actinob... [more]
DXS_ACTP25.647e-4950.511-deoxy-D-xylulose-5-phosphate synthase OS=Actinob... [more]
DXS_PROMT7.376e-4950.001-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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