CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHEAM (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dxs PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.633e-49
Identity = 101/195 (51.79%), Postives = 134/195 (68.72%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG K   AIYSSFLQRGYDQ++HDV LQ+LPV FA+DR G+VGADG TH GAFD+++M C+PNMV+MAPSDE E   M  T    ++ PS  R+PRG+  GA      + T L IGKG +  +G ++AIL +G+      LAA +  ++ ++ TVAD RF KPLD  L+ +LA  H++L+TVEE ++ GG GS
Sbjct:  381 ACEGYKAVVAIYSSFLQRGYDQLIHDVALQRLPVLFAIDRGGIVGADGATHQGAFDLSYMRCIPNMVIMAPSDENECRQMFYTGYCYNEGPSAVRYPRGSATGA--EQIEEMTALPIGKGVMRRQGQKIAILNFGT-----TLAAALTAAESLNATVADMRFVKPLDEALLLELAASHDVLVTVEENAIMGGAGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_PROM1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain NATL1A) GN=dxs PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.633e-49
Identity = 97/196 (49.49%), Postives = 133/196 (67.86%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            +A EG+KP  AIYS+FLQR YDQ++HD+ +Q LPV F +DRAG+VGADGPTH G +DI+++ C+PN  VMAP DE+EL  M+ T  +  + PS  R PRG+G GA L        LEIGK   + EG+ + I+GYGS+V   +  A +LK   ++ TV +ARF +PLD D I + A     ++T+EEG+ +GGFGS
Sbjct:  380 MACEGIKPVVAIYSTFLQRAYDQLIHDIGIQNLPVTFVLDRAGIVGADGPTHQGQYDISYLRCIPNFTVMAPKDESELQQMLVT-CINHNGPSALRIPRGSGEGAALMEEG-WESLEIGKAETIEEGENLLIIGYGSMVFPAIKTAAILKEFGVNCTVINARFIRPLDEDTIHEAAKRIGKVVTMEEGTLLGGFGS 573          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MAGSM (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetococcus sp. (strain MC-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.633e-49
Identity = 103/196 (52.55%), Postives = 139/196 (70.92%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA+EG+ P  AIYS+F+QR YDQ++HDV LQ LPV FA+DRAGLVGADG TH GA+D++++  +P M +MAP+DE EL HM+ TA  + ++P   R+PRG  +G  LPP      LEIG+GR L +G+  AIL  G  V   + AA +L+ Q ISV+V DARF KPLD  L++++A  H +++ VEE +V GGFGS
Sbjct:  376 LATEGILPVVAIYSTFMQRAYDQLIHDVALQDLPVIFALDRAGLVGADGATHAGAYDLSYLRTVPGMTIMAPADENELRHMLHTAVAL-NKPVALRYPRGTALG--LPPEPPHV-LEIGRGRTLRKGEHAAILAVGQPVHPALEAAAILEQQGISVSVYDARFVKPLDQRLLQEVA-MHGVVLVVEENAVQGGFGS 566          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHIDS (1-deoxy-D-xylulose-5-phosphate synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dxs PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.258e-48
Identity = 99/196 (50.51%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS
Sbjct:  380 LAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGTVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDETLILEMAASHEALVTVEENAIMGGAGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_PROM5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9515) GN=dxs PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.258e-48
Identity = 97/196 (49.49%), Postives = 139/196 (70.92%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            ++ +G+KP  AIYS+FLQR +DQ++HDV +Q LPV F +DRAG+VGADGPTH G +DI++M  +PN V+MAP DEAEL  M+ T ++    P+  R PRG+G G V   +    PL IG+G IL +G+ + I+ YGS+V   +  + +LK ++IS  V +ARF +PLD DLI  LAN+ + ++T+EEG+ +GGFGS
Sbjct:  380 MSCDGLKPVVAIYSTFLQRAFDQLIHDVGIQNLPVSFVLDRAGIVGADGPTHQGQYDISYMRSIPNFVLMAPKDEAELQRMLIT-SINHKGPTALRIPRGSGRG-VAVMDEGWEPLNIGEGEILEDGEDILIVAYGSMVSSAIETSKLLKDKNISPCVINARFVRPLDKDLILPLANKIKKVVTMEEGTLIGGFGS 573          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_NITEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosomonas eutropha (strain C91) GN=dxs PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.258e-48
Identity = 98/195 (50.26%), Postives = 135/195 (69.23%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG+KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DRAGLVGADGPTH G+FD++++ C+PN+ VM P+DE E   M+ TA  + D P+  R+PRG G G  +    +  PL  GKG I  +G R+A+L +GS++  C+ A +     ++  TV + RF KPLD +L+  LA EHE+L+TVEE ++ GG GS
Sbjct:  374 ACEGLKPVVAIYSTFLQRAYDQLIHDVAIQNLPVVFAIDRAGLVGADGPTHAGSFDLSYLRCIPNITVMMPADENECRQMLYTAFQL-DTPTAVRYPRGTGPGVQIKQEMQIVPL--GKGEIRRQGTRIALLAFGSMLSPCLEAGD-----ELDATVVNMRFVKPLDQELVMTLAAEHELLVTVEENTIMGGAGS 560          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_KLEP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=dxs PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.258e-48
Identity = 101/196 (51.53%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA    KP  AIYS+FLQR YDQV+HDV +QKLPV F +DRAG+VGADG TH GAFD++F+ C+P+MVVM PSDE E   M+ T     D P   R+PRG+G GA L P      L IGKG +  +G+++AIL +G+++ +    A+ L     + T+ D RF KPLDT LI QLA EH+ L+T+EE ++ GG GS
Sbjct:  380 LAIGDYKPVVAIYSTFLQRAYDQVIHDVAIQKLPVLFTIDRAGIVGADGQTHQGAFDLSFLRCIPDMVVMTPSDENECRQMLYTGYHYSDGPCAVRYPRGSGTGATLEPL---ASLPIGKGVVKRQGEKIAILNFGTLLPEAAAVADKL-----NATLVDMRFVKPLDTALILQLAGEHDALVTLEENAIMGGAGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHEDO (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=dxs PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.643e-48
Identity = 98/195 (50.26%), Postives = 134/195 (68.72%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG K   AIYS+FLQRGYDQ++HDV LQ+LPV FA+DR G+VGADG TH GAFD++FM C+PN+V+MAP+DE E   M+ T     D P+  R+PRG   GA      + T L IGKGR+  +G ++AIL +G+      LA+ +  ++ +  +VAD RF KPLD DL+  LA EH++++T+EE ++ GG GS
Sbjct:  381 ACEGFKSVVAIYSTFLQRGYDQLIHDVALQRLPVLFAIDRGGIVGADGATHQGAFDLSFMRCIPNLVIMAPADENECRQMLYTGYRYQDGPTAVRYPRGFATGA--EQIEQMTALPIGKGRVCRQGKKIAILNFGT-----TLASALEVAEQLDASVADMRFIKPLDVDLLHTLALEHDVIVTIEENAIMGGAGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_PSEA6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=dxs PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.643e-48
Identity = 99/192 (51.56%), Postives = 132/192 (68.75%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGG 576
            LA EG     AIYS+FLQR YDQ++HDV LQ LPV FA+DRAGLVGADGPTH GAFDI F+ C+PNMV+M P+DE E   M+ T   + ++P+  R+PRG+G G  + P+N    LEIGK R + +G++VAIL +G ++     AA +L     + TV D RF KPLDT+ +  +A  HE+LIT+E+G+  G
Sbjct:  380 LAKEGQNAVVAIYSTFLQRAYDQLIHDVALQNLPVLFAIDRAGLVGADGPTHQGAFDIPFLRCIPNMVIMTPADENECRQMLYTGHKL-NKPAAVRYPRGSGTG--VKPDNTMQALEIGKSRTIRQGEKVAILNFGVLLPYAEKAAEVL-----NATVIDMRFVKPLDTEAVANVAKNHELLITLEDGATTG 563          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CITK8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=dxs PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.643e-48
Identity = 97/196 (49.49%), Postives = 133/196 (67.86%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M P DE E   M+ T    +D P+  R+PRGN +G  L P  K   L IGKG +  +G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE+LIT+EE ++ GG GS
Sbjct:  380 LAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVMFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPGDENECRQMLYTGYHYNDGPTAVRYPRGNAVGVELTPLEK---LPIGKGLVKRQGEKLAILNFGTLLPEAAKVA-----ESLNATLVDMRFVKPLDETLILEMAERHEVLITLEENAIMGGAGS 567          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_SHEAM9.633e-4951.791-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_PROM19.633e-4949.491-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_MAGSM9.633e-4952.551-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_SHIDS1.258e-4850.511-deoxy-D-xylulose-5-phosphate synthase OS=Shigell... [more]
DXS_PROM51.258e-4849.491-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_NITEC1.258e-4850.261-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_KLEP71.258e-4851.531-deoxy-D-xylulose-5-phosphate synthase OS=Klebsie... [more]
DXS_SHEDO1.643e-4850.261-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_PSEA61.643e-4851.561-deoxy-D-xylulose-5-phosphate synthase OS=Pseudoa... [more]
DXS_CITK81.643e-4849.491-deoxy-D-xylulose-5-phosphate synthase OS=Citroba... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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