CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ECODH (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain K12 / DH10B) GN=dxs PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.803e-48
Identity = 99/196 (50.51%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS
Sbjct:  380 LAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ECOBW (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain K12 / BW2952) GN=dxs PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.803e-48
Identity = 99/196 (50.51%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS
Sbjct:  380 LAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ECO81 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O81 (strain ED1a) GN=dxs PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.803e-48
Identity = 99/196 (50.51%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS
Sbjct:  380 LAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ECO7I (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.803e-48
Identity = 99/196 (50.51%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS
Sbjct:  380 LAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ECO45 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.803e-48
Identity = 99/196 (50.51%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS
Sbjct:  380 LAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ECO27 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.803e-48
Identity = 99/196 (50.51%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS
Sbjct:  380 LAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ECOLU (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.660e-48
Identity = 99/196 (50.51%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS
Sbjct:  380 LAIGGYKPVVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_BURXL (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia xenovorans (strain LB400) GN=dxs PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.660e-48
Identity = 105/201 (52.24%), Postives = 136/201 (67.66%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA+EG+KP  AIYS+FLQR YDQ++HDV LQ LPV FA+DRAGLVGADG TH GA+D+ F+ C+PNM VMA SDE E   M+ T A+    P+  R+PRG G G  +    + T L +GKG I  E     G R+AIL +G++V     A ++  ++ +  TVA+ RF KPLD DL+RQLA  H+ ++TVEEG V GG GS
Sbjct:  375 LAAEGMKPVVAIYSTFLQRAYDQLIHDVALQNLPVVFAIDRAGLVGADGATHAGAYDLAFLRCIPNMTVMAASDENECRQMLYT-ALQQPNPTAVRYPRGAGTG--VATIKQMTALPLGKGEIRRETSQPAGKRIAILAFGTMV-----APSLAAAEQLDATVANMRFVKPLDADLVRQLAETHDAIVTVEEGCVMGGAGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_BORPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella parapertussis GN=dxs PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.660e-48
Identity = 106/196 (54.08%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA EG KP  AIYS+FLQRGYDQ+VHDV LQ L V FA+DRAGLVGADG TH G +DI F+ C+PNMVV APSDE+E   +++T       P+  R+PRG G GA +       PL  GKG +  EG R+AILG+G++VQ  + AA       I  TVAD RF KPLD +L+ +LA  H+ L+TVEE ++ GG GS
Sbjct:  376 LACEGQKPVVAIYSTFLQRGYDQLVHDVALQNLDVTFALDRAGLVGADGATHAGNYDIAFLRCVPNMVVAAPSDESEARLLLST-CYEHPGPASVRYPRGAGCGAAVGEGLATVPL--GKGLVRREGRRIAILGFGTLVQAALGAAG-----QIDATVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGGAGS 563          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_BORBR (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella bronchiseptica GN=dxs PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.660e-48
Identity = 106/196 (54.08%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA EG KP  AIYS+FLQRGYDQ+VHDV LQ L V FA+DRAGLVGADG TH G +DI F+ C+PNMVV APSDE+E   +++T       P+  R+PRG G GA +       PL  GKG +  EG R+AILG+G++VQ  + AA       I  TVAD RF KPLD +L+ +LA  H+ L+TVEE ++ GG GS
Sbjct:  376 LACEGQKPVVAIYSTFLQRGYDQLVHDVALQNLDVTFALDRAGLVGADGATHAGNYDIAFLRCVPNMVVAAPSDESEARLLLST-CYEHPGPASVRYPRGAGCGAAVGEGLATVPL--GKGLVRREGRRIAILGFGTLVQAALGAAG-----QIDATVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGGAGS 563          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_ECODH2.803e-4850.511-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECOBW2.803e-4850.511-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECO812.803e-4850.511-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECO7I2.803e-4850.511-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECO452.803e-4850.511-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECO272.803e-4850.511-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECOLU3.660e-4850.511-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_BURXL3.660e-4852.241-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BORPA3.660e-4854.081-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS_BORBR3.660e-4854.081-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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