CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ACIAD (1-deoxy-D-xylulose-5-phosphate synthase OS=Acinetobacter sp. (strain ADP1) GN=dxs PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.048e-43
Identity = 95/202 (47.03%), Postives = 130/202 (64.36%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANML-KSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A EG+KP  AIYS+FLQRGYDQ++HDV LQ L V F +DRAGLVG DGPTH GA+D  +M  +PN+V+MAP DE E   M+ TA   +  P+  R+PRG G+G  +    + T LEIGK  ++++      + + IL +GS V   + AA  L +  DI +TV + RF KPLD  +IR LA   ++ +T+EE +V  G GS
Sbjct:  383 MACEGLKPVVAIYSTFLQRGYDQLIHDVALQNLDVTFGIDRAGLVGEDGPTHAGAYDYAYMRTIPNLVIMAPKDENECRQMLHTAYDFNG-PAAVRYPRGAGLGVEI--QQELTKLEIGKAEMVLQCHPEHDEHITILAFGSRVSVAMEAAQQLAQLHDIGITVVNMRFVKPLDEQIIRDLAERTQLFVTIEEHAVMAGAGS 581          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_XANOR (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthomonas oryzae pv. oryzae GN=dxs PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.347e-42
Identity = 92/196 (46.94%), Postives = 129/196 (65.82%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A++G KP  AIYS+FLQRGYDQ+VHDV +Q+L V FA+DR G+VG DG TH G  D++F+ C+P+MVVMAP+DEAE   M++T       P+  R+PRG G GA L  ++    L IGK ++   G R+A+LG+G+ V      A     +D+ +TV + RF KPLD  ++ +LA  HE  +T+E+  V GG GS
Sbjct:  383 MATQGAKPVVAIYSTFLQRGYDQLVHDVAVQQLDVLFAIDRGGVVGPDGATHAGNLDLSFLRCVPHMVVMAPADEAECRQMLSTGMQYQG-PAAVRYPRGTGPGAAL--DSSLATLPIGKAQLRHSGTRIALLGFGATVD-----AAEAVGRDLGLTVVNMRFVKPLDKAMLLELAKTHEGFVTIEDNVVAGGAGS 570          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_XANOP (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=dxs PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.347e-42
Identity = 92/196 (46.94%), Postives = 129/196 (65.82%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A++G KP  AIYS+FLQRGYDQ+VHDV +Q+L V FA+DR G+VG DG TH G  D++F+ C+P+MVVMAP+DEAE   M++T       P+  R+PRG G GA L  ++    L IGK ++   G R+A+LG+G+ V      A     +D+ +TV + RF KPLD  ++ +LA  HE  +T+E+  V GG GS
Sbjct:  383 MATQGAKPVVAIYSTFLQRGYDQLVHDVAVQQLDVLFAIDRGGVVGPDGATHAGNLDLSFLRCVPHMVVMAPADEAECRQMLSTGMQYQG-PAAVRYPRGTGPGAAL--DSSLATLPIGKAQLRHSGTRIALLGFGATVD-----AAEAVGRDLGLTVVNMRFVKPLDKAMLLELAKTHEGFVTIEDNVVAGGAGS 570          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_XANOM (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=dxs PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.347e-42
Identity = 92/196 (46.94%), Postives = 129/196 (65.82%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A++G KP  AIYS+FLQRGYDQ+VHDV +Q+L V FA+DR G+VG DG TH G  D++F+ C+P+MVVMAP+DEAE   M++T       P+  R+PRG G GA L  ++    L IGK ++   G R+A+LG+G+ V      A     +D+ +TV + RF KPLD  ++ +LA  HE  +T+E+  V GG GS
Sbjct:  383 MATQGAKPVVAIYSTFLQRGYDQLVHDVAVQQLDVLFAIDRGGVVGPDGATHAGNLDLSFLRCVPHMVVMAPADEAECRQMLSTGMQYQG-PAAVRYPRGTGPGAAL--DSSLATLPIGKAQLRHSGTRIALLGFGATVD-----AAEAVGRDLGLTVVNMRFVKPLDKAMLLELAKTHEGFVTIEDNVVAGGAGS 570          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_DEHSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Dehalococcoides sp. (strain CBDB1) GN=dxs PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.347e-42
Identity = 93/196 (47.45%), Postives = 127/196 (64.80%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A++G  P   IYS+FLQRG+DQ++HDV LQKLPV FA+DR G+VG DG TH G FD++FMS +P+MVV APSDE +L H++ T AV   +P   R+PRG G GA +  +    P  IG+  IL+ G  VAIL  G  V     A  +L    I  T+ + R+  PLD++L+ ++A  H+ L+TVEE  + GG GS
Sbjct:  387 MATQGYIPVVVIYSTFLQRGFDQIIHDVCLQKLPVVFAIDRGGIVGDDGKTHQGIFDLSFMSLIPDMVVSAPSDENDLQHLIYT-AVNSGKPFALRYPRGFGEGAEIESSLHNIP--IGQNEILVNGSDVAILATGKSVAFAKDALEILTESGIKPTLVNNRYISPLDSELVLKIAQSHKYLVTVEENVISGGLGS 579          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_LISW6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dxs PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.298e-42
Identity = 90/196 (45.92%), Postives = 128/196 (65.31%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA++G+KPF AIYS+FLQR YDQ+VHDV  QKL V   +DRAGLVGADG TH G FDI+F++ +PNM++  P DE E   ++ TA   D  P   R+PRGNG+G  L  +N  T + IG+   +++     I+ +G  +Q  + AA+ L+++   V V +ARF KPLD  L+ Q+  +   ++TVEE  + GGFG+
Sbjct:  377 LATQGMKPFLAIYSTFLQRAYDQLVHDVCRQKLNVVIGIDRAGLVGADGETHQGIFDISFLNSIPNMIITMPKDEVEARQLMVTAFDYDAGPFAIRYPRGNGLGVELTESN--TLIPIGEWETIIQPIDAVIVTFGPTIQLALKAADQLETEGYRVGVINARFIKPLDETLLHQMIKQKIPILTVEESLLKGGFGA 570          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_FRATM (1-deoxy-D-xylulose-5-phosphate synthase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=dxs PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.298e-42
Identity = 92/196 (46.94%), Postives = 131/196 (66.84%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA +G+KP  AIYS+FLQR YDQV+HD+ LQ L V +A+DRAGLVGADG TH G+FD+ FM C+PN V+M PSDE E  HM+      +  P+  R+PRG GIGA +        LE+GK +I+ +G ++AIL +G+++    LA  +  ++    TV D RF KPLD  ++ +++  +EI++T+EE  + GG GS
Sbjct:  375 LACQGLKPVVAIYSTFLQRAYDQVIHDIALQNLDVLYAVDRAGLVGADGATHDGSFDLAFMRCIPNHVIMTPSDENEAYHMLEFGYEYNG-PAMVRYPRGAGIGAEI---TGSLDLELGKAKIVKQGSKIAILNFGTLLP---LAKQL--AEKYHATVIDMRFVKPLDEIMLDKVSQTYEIILTLEENCIAGGAGS 561          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_DESDG (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfovibrio desulfuricans (strain G20) GN=dxs PE=3 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 2.298e-42
Identity = 93/197 (47.21%), Postives = 130/197 (65.99%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANML-KSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGS 585
            LA++G +P  AIYS+FLQR YDQ+VHDV LQKLPV F +DR GLVG DGPTH GAFD++++  +PN+ ++AP DEAEL   + T A+  + P   R+PRG G+GA L  +     LE G+G +L +G  VA++  GS V   +  A  + +S   +V+V +ARF KPLD + +  LA  H+ L+ +EE  + GGF S
Sbjct:  387 LAAQGFRPVVAIYSTFLQRSYDQIVHDVCLQKLPVTFCLDRGGLVGEDGPTHHGAFDLSYLRHIPNLTIIAPKDEAELQQAMKT-ALAGEGPVAIRYPRGIGVGACLSAD--PGVLEHGRGELLKKGADVAVIAVGSRVHPALAVAEEIERSTGKAVSVFNARFVKPLDAEQLVALARSHDSLLLLEENTTTGGFSS 580          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CYTH3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=dxs PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.298e-42
Identity = 92/200 (46.00%), Postives = 132/200 (66.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDR-PSCFRFPRGNGIGAVLPPNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            LA++G+ PFC IYS+F+QR YDQV+HDV +Q L V F +DRAG  G DGPTH GA+D+ F  C+PN+VV AP +E EL +++ TA +  ++ P   R+PRG G+     PN K TP E   IGKGR + +GD VAIL  G +    + A  +L+ +++S    D RF KP+D +++  +  + + +ITVE+G  +GGFGS
Sbjct:  385 LATQGLIPFCNIYSTFMQRAYDQVIHDVCIQNLHVIFCLDRAGFAGVDGPTHHGAYDLAFFRCIPNLVVSAPMNEQELRNLMYTAQLQKNKGPFSIRYPRGQGV----MPNWK-TPFEEITIGKGRKVSDGDDVAILSIGHIGNYVIEAKALLREEELSPAHFDMRFVKPIDEEMLHLVFKKFKKIITVEDGCLMGGFGS 579          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_XANAC (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthomonas axonopodis pv. citri GN=dxs PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.120e-42
Identity = 92/196 (46.94%), Postives = 129/196 (65.82%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A++G KP  AIYS+FLQRGYDQ+VHDV +Q+L V FA+DR G+VG DG TH G  D++F+ C+P+MVVMAP+DEAE   M++T  V    P+  R+PRG G GA L  +    P  IGK ++   G R+A+LG+G+ V      A     +++ +TV + RF KPLD  L+ +LA  H+  +T+E+  V GG GS
Sbjct:  383 MATQGAKPVVAIYSTFLQRGYDQLVHDVAVQQLDVLFAIDRGGVVGPDGATHAGNLDLSFLRCVPHMVVMAPADEAECRQMLST-GVQYQGPAAVRYPRGTGPGAALDASLATLP--IGKAQLRHSGTRIALLGFGATVD-----AAEAVGRELGLTVVNMRFVKPLDKALLLELAKTHDGFVTIEDNVVAGGAGS 570          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_ACIAD6.048e-4347.031-deoxy-D-xylulose-5-phosphate synthase OS=Acineto... [more]
DXS_XANOR1.347e-4246.941-deoxy-D-xylulose-5-phosphate synthase OS=Xanthom... [more]
DXS_XANOP1.347e-4246.941-deoxy-D-xylulose-5-phosphate synthase OS=Xanthom... [more]
DXS_XANOM1.347e-4246.941-deoxy-D-xylulose-5-phosphate synthase OS=Xanthom... [more]
DXS_DEHSC1.347e-4247.451-deoxy-D-xylulose-5-phosphate synthase OS=Dehaloc... [more]
DXS_LISW62.298e-4245.921-deoxy-D-xylulose-5-phosphate synthase OS=Listeri... [more]
DXS_FRATM2.298e-4246.941-deoxy-D-xylulose-5-phosphate synthase OS=Francis... [more]
DXS_DESDG2.298e-4247.211-deoxy-D-xylulose-5-phosphate synthase OS=Desulfo... [more]
DXS_CYTH32.298e-4246.001-deoxy-D-xylulose-5-phosphate synthase OS=Cytopha... [more]
DXS_XANAC5.120e-4246.941-deoxy-D-xylulose-5-phosphate synthase OS=Xanthom... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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