CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_PORGI (1-deoxy-D-xylulose-5-phosphate synthase OS=Porphyromonas gingivalis GN=dxs PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.298e-39
Identity = 85/196 (43.37%), Postives = 119/196 (60.71%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA EG+ PFC IYSSF+QRGYDQV+HDV L    V   +DRAGLVG DG TH G FD+ F+ C+P++VV +P +E EL +++ TA    D P   R+PRG G+  +    N    +EI +GR L EG+ +A L  G +          L  + +S    D  F KPLD +++  +A + + +I+VE+G + GGFGS
Sbjct:  386 LAKEGLIPFCNIYSSFIQRGYDQVIHDVALSGSHVVICLDRAGLVGEDGATHHGVFDMAFLRCVPDIVVASPLNEHELRNLMLTAYKGYDGPMVIRYPRGKGV--LTDWRNTPRLVEIARGRCLTEGEAIAFLSIGPIGNMVQKVVERLAEKGVSAAHYDMVFLKPLDEEMLHGIAKKFDTIISVEDGCIQGGFGS 579          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_PORG3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=dxs PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.298e-39
Identity = 85/196 (43.37%), Postives = 119/196 (60.71%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA EG+ PFC IYSSF+QRGYDQV+HDV L    V   +DRAGLVG DG TH G FD+ F+ C+P++VV +P +E EL +++ TA    D P   R+PRG G+  +    N    +EI +GR L EG+ +A L  G +          L  + +S    D  F KPLD +++  +A + + +I+VE+G + GGFGS
Sbjct:  386 LAKEGLIPFCNIYSSFIQRGYDQVIHDVALSGSHVVICLDRAGLVGEDGATHHGVFDMAFLRCVPDIVVASPLNEHELRNLMLTAYKGYDGPMVIRYPRGKGV--LTDWRNTPRLVEIARGRCLTEGEAIAFLSIGPIGNMVQKVVERLAEKGVSAAHYDMVFLKPLDEEMLHGIAKKFDTIISVEDGCIQGGFGS 579          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CLOPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium perfringens (strain SM101 / Type A) GN=dxs PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.298e-39
Identity = 85/196 (43.37%), Postives = 127/196 (64.80%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFG 582
            +A+EG+KPF A+YS+FLQR YDQV+HDV +Q LPV   +DRAGLVG DG TH G FDI+F+S +PNM ++AP    E M ++   A   + P   R+PRG  I   L P +K   +E GK   + EG+++AI+  G +VQ  ++AA  +K + +I + + +A F KP+D +L+  L+ +   ++T+E+    GGFG
Sbjct:  375 MAAEGLKPFFAVYSTFLQRAYDQVLHDVCIQNLPVTLCLDRAGLVGEDGETHQGIFDISFLSPMPNMTIVAPKCIDE-MEVILKWASNFNAPLAIRYPRGGDIDVNLKPLSK---IEYGKWEKVQEGEKIAIVATGKMVQHAMIAAQKIKEEKNIDILIINATFIKPIDKELLNSLSKDGFKIVTIEDNIKKGGFG 566          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MARMS (1-deoxy-D-xylulose-5-phosphate synthase OS=Marinomonas sp. (strain MWYL1) GN=dxs PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 89/197 (45.18%), Postives = 123/197 (62.44%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDR-VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A +G+KP  AIYS+FLQR YDQ++HDV LQ L V FA+DRAGLVG DGPTH G +D++++ C+PNMVVMAPSDE E   M+ T       P+  R+PRG G G  +   +  + L+IGK R L  G   + I G+G      + AAN L       T+ D RF KP+D + +     + ++++TVEE ++ GG GS
Sbjct:  383 MACDGIKPVVAIYSTFLQRAYDQLIHDVALQNLDVLFAIDRAGLVGEDGPTHAGVYDLSYLRCIPNMVVMAPSDEDECRKMLQTGYEYKG-PAAVRYPRGTGQGVDI--ESTLSTLKIGKSRTLRTGQSGIVICGFGRPTYDALKAANTL-----DATLLDMRFVKPIDEETL-LTHRDAKLIVTVEENAIMGGAGS 570          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MACCJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Macrococcus caseolyticus (strain JCSC5402) GN=dxs PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 86/198 (43.43%), Postives = 121/198 (61.11%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLP--PNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A+ G+KP+ AIYS+FLQR YDQ++HDVD Q L V F +DR+GLVGADG TH G FDI+F++ +PNM VM P DE E  H++  A    + P   R+PRGNG G  +   PN+    +  G   +L EG  V +L +G  ++        L  + +S+ V +ARF KPLD   +   A  +  ++TVEE  + GGFG+
Sbjct:  376 MAANGMKPYVAIYSTFLQRAYDQMLHDVDRQNLHVVFGIDRSGLVGADGETHQGVFDISFLTHMPNMTVMMPKDENEAYHLLYNAFYEYEGPIAIRYPRGNGYGVKIDSIPNS----VVRGDWEVLHEGTDVIVLSFGPTLKLIEAVREELLKEGVSIEVVNARFIKPLDYHYLAAAAKRNIPVLTVEEAMLSGGFGA 569          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CLOD6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium difficile (strain 630) GN=dxs PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 85/196 (43.37%), Postives = 125/196 (63.78%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G+KP+ A+YSSFLQR YDQV+HDV + K PV F +DRAGLVG DG TH G FD+++++ +PN+VVMAP D  E M ++   ++  D P   R+PRG+     L     G  + +GK  +L +G    IL  GS+V+  + A  +L  + I+ T+ +ARF KP+D  +++ L   H+ ++T+E+  V GGFGS
Sbjct:  376 LAKNGMKPYFAVYSSFLQRAYDQVIHDVCITKKPVTFLIDRAGLVGNDGETHHGMFDLSYLNSIPNIVVMAPKDTRE-MELMMDLSLKLDCPLAIRYPRGSSY--YLDKGEYG-EIVLGKYEVLDDGQDTVILCIGSMVKHALEAKEILSREGINPTIVNARFLKPIDEGMLKALLKNHKNVVTIEDNIVTGGFGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_RHOBA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopirellula baltica GN=dxs PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.629e-38
Identity = 82/194 (42.27%), Postives = 122/194 (62.89%), Query Frame = 1
Query:   13 GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSLY 591
            G++P   IYS+FLQR YDQ+  +V LQ LPV F MDRAGL   DGPTH G +DI +M   PN+V+MAP    EL  M+  A  + D PS  R+P+ + + A   P     P+EIGK   + EG    I+ YG++++Q + AA  L+  ++ + V +ARF KP+D +++ +  ++   ++T+EEG+ VGGFGS +
Sbjct:  388 GMRPIVDIYSTFLQRSYDQIFQEVALQDLPVVFMMDRAGLTAPDGPTHHGVYDIGYMRLFPNLVLMAPGYAEELSMMLDKALTL-DHPSGIRYPKASALEATHTP----APIEIGKAEWIREGTDGTIVAYGAMLEQAIAAAEQLEG-ELEIGVVNARFVKPIDAEMVHKTLSDGRFVVTLEEGTRVGGFGSAF 575          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_LISMO (1-deoxy-D-xylulose-5-phosphate synthase OS=Listeria monocytogenes GN=dxs PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.629e-38
Identity = 85/196 (43.37%), Postives = 123/196 (62.76%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA++G+KPF AIYS+FLQR YDQ+VHDV  QKL V   +DRAGLVGADG TH G FDI+F++ +PNM +  P DE E   ++ TA   +D P   R+PRG   G  +  +N  T + IG+   +++     IL +G  ++  + AA  L+ +   V V +AR+ KPLD  L+ ++  +   ++TVEE  + GGFG+
Sbjct:  352 LATQGMKPFLAIYSTFLQRAYDQLVHDVCRQKLNVVIGIDRAGLVGADGETHQGIFDISFLNSIPNMTISMPKDEVEARQLMDTAFSYNDGPFAIRYPRGEAPGVQVVESN--TLIPIGQWETIIQPLDAVILTFGPTIELALKAAEQLEIEGYRVGVINARYIKPLDEALLHKILKQKIPILTVEESLLKGGFGA 545          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_DESHY (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfitobacterium hafniense (strain Y51) GN=dxs PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.629e-38
Identity = 88/196 (44.90%), Postives = 120/196 (61.22%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G+KP  +IYS+F QR YDQV+HDV L    V  A+DRAG+VG DGPTH G FDI+F+  +PN+V MAP DE EL HM+ T+  +D  P   R+PR  G G  L    +  P  +GK  IL EG  + ++G G +V  C+ AA  L+ + +  TV + R+  PLD + I + A   + +ITVE+  + GG GS
Sbjct:  376 LAFGGMKPVVSIYSTFYQRAYDQVLHDVCLPHANVVMAIDRAGVVGDDGPTHHGVFDISFLRVIPNLVFMAPKDENELRHMLYTSLQLDG-PVALRYPRSVGQGVELTEELRELP--VGKAEILQEGKDITLIGVGPMVYTCLAAAVELRHRGVEATVINLRYINPLDRESILRYARMTKRIITVEDHMLAGGMGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_DESHD (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dxs PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.629e-38
Identity = 88/196 (44.90%), Postives = 120/196 (61.22%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G+KP  +IYS+F QR YDQV+HDV L    V  A+DRAG+VG DGPTH G FDI+F+  +PN+V MAP DE EL HM+ T+  +D  P   R+PR  G G  L    +  P  +GK  IL EG  + ++G G +V  C+ AA  L+ + +  TV + R+  PLD + I + A   + +ITVE+  + GG GS
Sbjct:  376 LAFGGMKPVVSIYSTFYQRAYDQVLHDVCLPHANVVMAIDRAGVVGDDGPTHHGVFDISFLRVIPNLVFMAPKDENELRHMLYTSLQLDG-PVALRYPRSVGQGVELTEELRELP--VGKAEILQEGKDITLIGVGPMVYTCLAAAVELRHRGVEATVINLRYINPLDRESILRYARMTKRIITVEDHMLAGGMGS 568          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_PORGI5.298e-3943.371-deoxy-D-xylulose-5-phosphate synthase OS=Porphyr... [more]
DXS_PORG35.298e-3943.371-deoxy-D-xylulose-5-phosphate synthase OS=Porphyr... [more]
DXS_CLOPS5.298e-3943.371-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_MARMS2.013e-3845.181-deoxy-D-xylulose-5-phosphate synthase OS=Marinom... [more]
DXS_MACCJ2.013e-3843.431-deoxy-D-xylulose-5-phosphate synthase OS=Macroco... [more]
DXS_CLOD62.013e-3843.371-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_RHOBA2.629e-3842.271-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopi... [more]
DXS_LISMO2.629e-3843.371-deoxy-D-xylulose-5-phosphate synthase OS=Listeri... [more]
DXS_DESHY2.629e-3844.901-deoxy-D-xylulose-5-phosphate synthase OS=Desulfi... [more]
DXS_DESHD2.629e-3844.901-deoxy-D-xylulose-5-phosphate synthase OS=Desulfi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
back to top