CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_BACTN (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacteroides thetaiotaomicron GN=dxs PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.485e-38
Identity = 81/200 (40.50%), Postives = 124/200 (62.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQD-ISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A +G++PFC IYSSF+QR YD ++HDV +Q LPV   +DRAGLVG DGPTH GAFD+ ++  +PN+ + +P +E EL  ++ TA + D  P   R+PRG G+       +   PLE   +GKGR L +G  +A++  G +  +   A    +S+   S+   D RF KPLD +L+ ++      ++T+E+G++ GG GS
Sbjct:  387 MAKDGLQPFCNIYSSFMQRAYDNIIHDVAIQNLPVVLCLDRAGLVGEDGPTHHGAFDMAYLRPIPNLTIASPMNEHELRRLMYTAQLPDKGPFVLRYPRGRGVLV-----DWKCPLEEIPVGKGRKLKDGKDIAVISIGPIGNKARSAIARAESESGRSIAHYDLRFLKPLDEELLHEVGRTFRHIVTIEDGTIQGGMGS 581          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SULDN (1-deoxy-D-xylulose-5-phosphate synthase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=dxs PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.650e-38
Identity = 86/198 (43.43%), Postives = 122/198 (61.62%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILM--EGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH-EILITVEEGSVGGFGS 585
            LA EG KPFC IYS+FLQRGYDQV+HD  L  LPV FA+DRAG+VG DG TH G FD++F+  +PNM + AP DE      +A AA     P   R+PRG+     LP   + +P E+ K ++L   +GD V  +GYG+ V +    + +L+ +   +++ D RF KPLD +++R +A +H +  I  +   +GG GS
Sbjct:  364 LAKEGFKPFCTIYSTFLQRGYDQVIHDTCLMNLPVVFALDRAGIVGEDGETHQGVFDVSFLRAIPNMTLFAPRDEKSFHQAMAFAAQY-QFPCSLRYPRGSFTQTSLP---ESSPFELAKSQLLQSNKGD-VLFIGYGNGVGRAYETSKLLEEK---ISILDLRFIKPLDKEMLRDMATKHNKWFIFSDSAKMGGVGS 553          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_BACV8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=dxs PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.704e-37
Identity = 83/197 (42.13%), Postives = 122/197 (61.93%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A +G+ PFC IYSSF+QR YD V+HD+ +QKL V   +DRAGLVG DGPTH GAFD+ +M  +PN++V +P +E EL  ++ TA + D  P   R+PRG   G+++        +EIGKGR L EG  +A++  G +  Q   A    + +   S+   D RF KPLD  ++ ++    + ++TVE+G + GG GS
Sbjct:  387 MAKDGLLPFCNIYSSFMQRAYDNVIHDIAIQKLNVVLCLDRAGLVGEDGPTHHGAFDLAYMRPIPNLIVASPYNEHELRCLMYTAQLPDKGPFVIRYPRGR--GSLVDWKCPMQEIEIGKGRKLKEGKDIAVITLGPIGVQAEKAITHAEQETGKSIAHYDLRFLKPLDESMLHEIGKRFKQVVTVEDGVLKGGMGS 581          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_BACFR (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacteroides fragilis GN=dxs PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.704e-37
Identity = 79/196 (40.31%), Postives = 122/196 (62.24%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFG 582
            +A +G+ PFC IYSSF+QR YD ++HDV +QKL V F +DRAGLVG DGPTH G FD+ ++  +PN+ + +P DE EL  ++ TA + D  P   R+PRG   G+++        + +GKGR L +G+ +A++  G + +    A    ++   ISV   D RF KPLD +L+ ++  +   ++T+E+G + GG G
Sbjct:  387 MAKDGLLPFCNIYSSFMQRAYDNIIHDVAIQKLNVVFCLDRAGLVGEDGPTHHGVFDMAYLRPIPNLTISSPMDEHELRRLMYTAQLPDKGPFAIRYPRGR--GSLVDWECPLEEIPVGKGRKLKDGNDLAVITIGPIGKLAARAIERAEADTGISVAHYDLRFLKPLDEELLHEVGKKFRHIVTIEDGIIKGGMG 580          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_BACFN (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=dxs PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.704e-37
Identity = 79/196 (40.31%), Postives = 122/196 (62.24%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFG 582
            +A +G+ PFC IYSSF+QR YD ++HDV +QKL V F +DRAGLVG DGPTH G FD+ ++  +PN+ + +P DE EL  ++ TA + D  P   R+PRG   G+++        + +GKGR L +G+ +A++  G + +    A    ++   ISV   D RF KPLD +L+ ++  +   ++T+E+G + GG G
Sbjct:  387 MAKDGLLPFCNIYSSFMQRAYDNIIHDVAIQKLNVVFCLDRAGLVGEDGPTHHGVFDMAYLRPIPNLTISSPMDEHELRRLMYTAQLPDKGPFAIRYPRGR--GSLVDWECPLEEIPVGKGRKLKDGNDLAVITIGPIGKLAARAIERAEADTGISVAHYDLRFLKPLDEELLHEVGKKFRHIVTIEDGIIKGGMG 580          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CLOK5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=dxs PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.226e-37
Identity = 85/196 (43.37%), Postives = 124/196 (63.27%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A EG+KP  A+YS+FLQR YDQ++HD+ +QKLPV FA+DRAG+VG DG TH G FD+++++ +PNM VM+P   AEL HM+   A+  + P   R+PRG G    L P       E G+   ++   ++A++  G +V+  VLAA  L+   I V V  A F KPLD  ++++L  E   +IT+E+  + GG GS
Sbjct:  376 MAVEGLKPVFAVYSTFLQRSYDQLLHDICIQKLPVVFAVDRAGIVGDDGETHQGIFDLSYLTEMPNMTVMSPKCMAELTHMLKW-ALNQNCPIAIRYPRG-GDNVYLTPLE---DFEFGRWEYILNKGKIALVAQGRMVEHAVLAAEKLEQMGILVRVISACFIKPLDKVMLKKLIEEDVTIITIEDNIIRGGLGS 566          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CLOK1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium kluyveri (strain NBRC 12016) GN=dxs PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.226e-37
Identity = 85/196 (43.37%), Postives = 124/196 (63.27%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A EG+KP  A+YS+FLQR YDQ++HD+ +QKLPV FA+DRAG+VG DG TH G FD+++++ +PNM VM+P   AEL HM+   A+  + P   R+PRG G    L P       E G+   ++   ++A++  G +V+  VLAA  L+   I V V  A F KPLD  ++++L  E   +IT+E+  + GG GS
Sbjct:  376 MAVEGLKPVFAVYSTFLQRSYDQLLHDICIQKLPVVFAVDRAGIVGDDGETHQGIFDLSYLTEMPNMTVMSPKCMAELTHMLKW-ALNQNCPIAIRYPRG-GDNVYLTPLE---DFEFGRWEYILNKGKIALVAQGRMVEHAVLAAEKLEQMGILVRVISACFIKPLDKVMLKKLIEEDVTIITIEDNIIRGGLGS 566          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CLOAB (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium acetobutylicum GN=dxs PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.476e-37
Identity = 86/198 (43.43%), Postives = 122/198 (61.62%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPR-GNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSL 588
            LA+ G KP  A+YS+FLQR YDQV+HDV +QKLPV FA+DRAG+VG DG TH G FDI+++S +PNM +MAP    EL + +   AV  + P   R+P+ GN I  VL P  +      GK  IL +G  VAI+  G +VQ+ ++  + L    I   + +A F KP+D D + + A ++   + +E+  + GG GSL
Sbjct:  375 LAATGYKPVFAVYSTFLQRAYDQVLHDVCIQKLPVVFAIDRAGIVGEDGETHQGVFDISYLSSIPNMTIMAPKCVEEL-NYIMNWAVKQNYPIAVRYPKGGNDISDVLAPLKE---FRHGKWEILKDGKDVAIVAVGKMVQRAMVVRDELLKYGIDCAIINATFIKPIDKDTLNRFARDNYKFVVIEDNVLHGGIGSL 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CHRSD (1-deoxy-D-xylulose-5-phosphate synthase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=dxs PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.476e-37
Identity = 86/196 (43.88%), Postives = 121/196 (61.73%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A E +KP  AIYS+FLQRGYDQ++HDV +Q L V FA+DRAG+VG DGPTH GA D++F+ C+P M+V+AP+DEAE   M+ +AA     P+  R+PRG G G  +  N +  P+   + R       VA+L +GS+       A  L +  +++     R  KPLD + I   A +H +L+T+EE  V GG GS
Sbjct:  405 MACEAMKPVVAIYSTFLQRGYDQLIHDVAVQALDVTFAIDRAGVVGEDGPTHHGALDLSFLRCIPGMIVLAPADEAECRAML-SAAYHHPGPAAVRYPRGTGPGTQVASNLEALPIGEAETRRSGREGGVALLAFGSMNGPAGEVAERLDATHLNM-----RSVKPLDREAILAAARDHRLLVTLEESVVAGGAGS 594          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_NITSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitratiruptor sp. (strain SB155-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.214e-36
Identity = 85/197 (43.15%), Postives = 122/197 (61.93%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGD-RVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH-EILITVEEGSVGGFGS 585
            LA EG KPF AIYS+FLQRGYDQV+HD+ L  + V FA+DRAG+VG DG TH GAFD++++  +PNM + AP D   L + V  A    DRP  FR+PRG+    +L    +  P E+GK  +L+E +  V  +GYG+ V +   A   +K  D  V++ D RF KPLD +L+++L+  + +  +  +   +GG  S
Sbjct:  362 LAKEGFKPFVAIYSTFLQRGYDQVIHDIALMDVGVAFAIDRAGIVGEDGETHQGAFDVSYLRPIPNMHLFAPRDPKTLEYAVEFAKDF-DRPCAFRYPRGS---FILDDEFEAKPFELGKAELLVESEGDVLFVGYGNGVGR---AYETMKHIDEPVSLLDLRFVKPLDVELLQELSKRYRQWFVFSDSAKLGGVAS 551          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_BACTN4.485e-3840.501-deoxy-D-xylulose-5-phosphate synthase OS=Bactero... [more]
DXS_SULDN7.650e-3843.431-deoxy-D-xylulose-5-phosphate synthase OS=Sulfuri... [more]
DXS_BACV81.704e-3742.131-deoxy-D-xylulose-5-phosphate synthase OS=Bactero... [more]
DXS_BACFR1.704e-3740.311-deoxy-D-xylulose-5-phosphate synthase OS=Bactero... [more]
DXS_BACFN1.704e-3740.311-deoxy-D-xylulose-5-phosphate synthase OS=Bactero... [more]
DXS_CLOK52.226e-3743.371-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_CLOK12.226e-3743.371-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_CLOAB6.476e-3743.431-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_CHRSD6.476e-3743.881-deoxy-D-xylulose-5-phosphate synthase OS=Chromoh... [more]
DXS_NITSB3.214e-3643.151-deoxy-D-xylulose-5-phosphate synthase OS=Nitrati... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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