CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_EXIS2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=dxs PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.198e-36
Identity = 88/195 (45.13%), Postives = 121/195 (62.05%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A++G+KP  +IYS+F QR YDQ+VHDV  Q L V F +DR+GLVGADG TH G FDI FM  +PN+ ++   DE EL H++  +AV  + P   RFPRG GIG  +P +     + +    +  EG  VAI+ +G  VQ  +  A +L+  D+SV V +AR  KPLD  ++  L  E   L+T+EE  + GGFGS
Sbjct:  378 ATQGMKPVVSIYSTFFQRAYDQLVHDVARQNLDVTFTIDRSGLVGADGETHQGVFDIAFMRHVPNIRIVMAKDENELQHLL-YSAVKYEGPIAVRFPRGEGIG--VPMDETLHEISLDTWDVEREGTDVAIMAFGPQVQDALKIAELLEG-DVSVRVINARTIKPLDEKMLNALYAEGIPLVTLEEAVLKGGFGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_METI4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylacidiphilum infernorum (isolate V4) GN=dxs PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.482e-36
Identity = 80/197 (40.61%), Postives = 117/197 (59.39%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSL 588
            +A++G KP+CAIYS+FLQR YD ++HDV LQKLPV F +DR GL G DGPTH G FD+ ++  +PN+ +M P DE EL  M+ T A+    P   R+PRG+G G  +    +  P  IG+  ++  G  VAI   G +V+     A  L+    S  + + R  KP D   +   A   ++++++E+  + GGFGSL
Sbjct:  374 MATKGFKPYCAIYSTFLQRAYDPIIHDVCLQKLPVVFCLDRGGLSGDDGPTHHGLFDVAYLRTVPNITIMHPKDEDELADMLFT-AMHHPGPVAIRYPRGSGSGVAVKERPELIP--IGRAEVIKHGRDVAIFSLGIMVEMGKELAQKLEECGYSAALINPRTVKPFDRGTLEFFARSVDLIVSIEDHVLAGGFGSL 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CAMFF (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=dxs PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.352e-36
Identity = 83/198 (41.92%), Postives = 117/198 (59.09%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGD-RVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH-EILITVEEGSVGGFGSL 588
            +A EG KP+ AIYS+F+QR YDQV+HD  + +LPV F MDRAG+VG DG TH GAFDI+F++ +PN+ ++AP DE    +++  +   D  P   R+PRGN    +L    K     + KG IL  GD  VA +GYG+ V + V  A   K  +   T+ D  F KPLD +L+ Q+A  H +  +  +    GG G +
Sbjct:  362 MAKEGFKPYIAIYSTFMQRAYDQVIHDCAIMRLPVVFCMDRAGIVGEDGETHQGAFDISFLNAIPNLNLVAPRDEESFKNIMEFSYAFDS-PLAIRYPRGN---FILNNEYKSQKTALAKGEILENGDGSVAFIGYGNGVGKAVQTA---KKLNFKPTIVDLVFAKPLDKELLLQIAKTHNKWYVFSDSAKRGGIGEI 552          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_THET8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dxs PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.083e-35
Identity = 84/195 (43.08%), Postives = 116/195 (59.49%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LA  G+KP  AIYS+FLQR YDQV+HDV ++ LPV FA+DRAG+VGADG TH G FDI ++  +PN+ + AP D  EL  M+  A  +   P   R+PR N   A   P      +  GK  +L EG    IL +G  ++  + AA      D  V V +ARF KPLD +++R+L + +++L   +   +GGFGS
Sbjct:  370 LALRGMKPIVAIYSTFLQRAYDQVIHDVAIENLPVVFAIDRAGIVGADGATHHGVFDIAYLRTVPNLQIAAPKDALELRAMLKKALEVGG-PVAIRYPRDNVERA---PEGVWPEIAWGKWEVLKEGTEAYILAFGKTLRYALEAA----GDDPRVGVVNARFLKPLDREMLREL-SRYKLLTVEDHQKMGGFGS 555          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_THEMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermotoga maritima GN=dxs PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.721e-35
Identity = 80/196 (40.82%), Postives = 120/196 (61.22%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGS 585
            L   G+KP  AIYS+FLQR YDQ++HDV LQ  PV FA+DR+G+VG DGPTH G FDI ++  +PNM +++PS   E ++ + T     D P   R+P+ +  G V         +++G  +IL  G   AI+  G+++       N +    + VTV +A   KPLDT +++++A +H+++ITVEE   +GGFGS
Sbjct:  360 LGLHGMKPVVAIYSTFLQRAYDQIIHDVALQNAPVLFAIDRSGVVGEDGPTHHGLFDINYLLPVPNMKIISPSSPEEFVNSLYTVLKHLDGPVAIRYPKESFYGEVESLLENMKEIDLG-WKILKRGREAAIIATGTIL-------NEVLKIPLDVTVVNALTVKPLDTAVLKEIARDHDLIITVEEAMKIGGFGS 547          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CLOBA (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=dxs PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.721e-35
Identity = 76/195 (38.97%), Postives = 120/195 (61.54%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFG 582
            +A+ G+KP  A+YS+FLQRG+DQV+HDV +Q LPV FA+DRAG+VG DG TH G  D++++S +PNM ++AP    E+  M+   A+  + P   R+PRG  I   L    +   +  GK  ++ EG ++ I+  G ++Q  +LA  +LK + I   + +A F KP+D  L+  L  +   ++T+E+  + GG G
Sbjct:  375 MAANGLKPVFAVYSTFLQRGFDQVIHDVCIQDLPVTFAIDRAGIVGDDGETHQGIMDVSYLSMMPNMTIVAPKCTEEIPSMLRW-AIKKNSPVAIRYPRGKDIVCNLDALQE---ISYGKWEVVSEGKKICIIASGRMLQHALLAKEILKEKGIDPKIVNATFIKPIDKCLLENLKEDGYDILTIEDNIICGGLG 565          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CLOBB (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.554e-35
Identity = 77/195 (39.49%), Postives = 118/195 (60.51%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFG 582
            +A+ G+KP  A+YS+FLQRG+DQV+HDV +Q LPV FA+DRAG+VG DG TH G  D++++S +PNM ++AP    E+  M+   A+  + P   R+PRG  I   L    +   +  GK  ++ EG R+ I+  G ++Q   LA  +LK   I   + +A F KP+D  L+  L  +   ++T+E+  + GG G
Sbjct:  375 MAANGLKPVFAVYSTFLQRGFDQVIHDVCIQDLPVTFAIDRAGIVGDDGETHQGIMDVSYLSMMPNMTIVAPKCTEEIPSMLRW-AIKKNSPVAIRYPRGKDIVCNLHALQE---ISYGKWEVVSEGKRICIIASGRMLQHAFLAKEILKENGIDPKIVNATFIKPIDKCLLENLKEDGYDILTIEDNIICGGLG 565          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CLOTE (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium tetani GN=dxs PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.641e-35
Identity = 75/196 (38.27%), Postives = 125/196 (63.78%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A+ G++P  ++YS+FLQR YDQV+HDV +Q LPV FA+DRAGLVG DG TH G FD++++S +PNM +MAP    EL  M+   A+  + P   R+P+G     + P  N     + GK  +L +  +++I+  G +V++       LK ++I + + +A F KP+D +++ ++ +E + +IT+E+  + GGFG+
Sbjct:  376 MATAGLRPVFSVYSTFLQRAYDQVLHDVCIQNLPVVFAIDRAGLVGEDGETHQGVFDMSYLSHMPNMTIMAPKCVEELEFML-NWALSQESPIAIRYPKGESRLNLKPIKN----FQKGKWEVLEDKGKISIIATGRMVEKAFNVKETLKERNIDIGLINATFVKPIDKEMLNKIIDEEKTIITLEDNVILGGFGN 566          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CLOPH (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.641e-35
Identity = 77/195 (39.49%), Postives = 116/195 (59.49%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFG 582
            LA+ G KP  A+YS+FLQR YDQ++HDV + KLPV FA+DRAG+VG DG TH G FD++++S +P + V+AP +  E   M+    +  D P   R+P+     A L   +    +  GKG ++   + +A++  GS+V+  VL    L    +  T+ +ARF  PLD +++ QL   H + +T+EE    GGFG
Sbjct:  377 LAAAGFKPVVAVYSTFLQRAYDQILHDVCVGKLPVVFALDRAGIVGNDGETHQGMFDLSYLSHMPGLTVIAPKNSWEFERML-EYCIDFDGPIAIRYPKNT---AYLGLEDHKKEIIYGKGELIASEEEIALIAIGSMVETAVLVREHLHKLGLKATLVNARFISPLDEEMLHQLTKSHTLFVTMEENVKRGGFG 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CLONN (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium novyi (strain NT) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.641e-35
Identity = 78/195 (40.00%), Postives = 123/195 (63.08%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFG 582
            +A  G+KP  A+YS+FLQR YDQV+HDV  Q LPV FA+DRAG+VG+DG TH G FD++F++ +PNM +M P    E+ +M+  AA   + P   R+PRG   G  +  + K T   +GK  +L     +A++  G +V   +     +K+  +++TV +A F KP+D  +I++L +++  +IT+E+  + GGFG
Sbjct:  375 MAQSGLKPIFAVYSTFLQRAYDQVIHDVCHQNLPVVFAIDRAGIVGSDGETHQGVFDLSFLNHMPNMTIMCPKSLHEVKYMLKWAA-NQNSPVAIRYPRG---GDSIELSAK-TDYIVGKWEVLKTEGNIALIATGKMVATAIKVQEKMKAMGVNITVINACFVKPIDKSIIKKLVSKNYKIITLEDNVLSGGFG 564          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_EXIS24.198e-3645.131-deoxy-D-xylulose-5-phosphate synthase OS=Exiguob... [more]
DXS_METI45.482e-3640.611-deoxy-D-xylulose-5-phosphate synthase OS=Methyla... [more]
DXS_CAMFF9.352e-3641.921-deoxy-D-xylulose-5-phosphate synthase OS=Campylo... [more]
DXS_THET82.083e-3543.081-deoxy-D-xylulose-5-phosphate synthase OS=Thermus... [more]
DXS_THEMA2.721e-3540.821-deoxy-D-xylulose-5-phosphate synthase OS=Thermot... [more]
DXS_CLOBA2.721e-3538.971-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_CLOBB3.554e-3539.491-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_CLOTE4.641e-3538.271-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_CLOPH4.641e-3539.491-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_CLONN4.641e-3540.001-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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