CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_THET2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.062e-35
Identity = 84/195 (43.08%), Postives = 115/195 (58.97%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LA  G+KP  AIYS+FLQR YDQV+HDV ++ LPV FA+DRAG+VGADG TH G FDI ++  +PN+ + AP D  EL  M+  A  +   P   R+PR N   A   P      +  GK  +L EG    IL +G  ++  + AA      D  V V +ARF KPLD +++R L + +++L   +   +GGFGS
Sbjct:  370 LALRGMKPIVAIYSTFLQRAYDQVIHDVAIENLPVVFAIDRAGIVGADGATHHGVFDIAYLRTVPNLQIAAPKDALELRAMLKKALEVGG-PVAIRYPRDNVERA---PEGVWPEIAWGKWEVLKEGTEAYILAFGKTLKYALEAA----GDDPRVGVVNARFLKPLDREMLRAL-SRYKLLTVEDHQRMGGFGS 555          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_THESQ (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermotoga sp. (strain RQ2) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.062e-35
Identity = 80/196 (40.82%), Postives = 119/196 (60.71%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGS 585
            L   G+KP  AIYS+FLQR YDQ++HDV LQ  PV FA+DR+G+VG DGPTH G FD+ ++  +PNM +++PS   E +  + T     D P   R+P+ +  G V         +++G  +IL  G   AI+  G+++       N +    + VTV +A   KPLDT +++++A EH+++ITVEE   +GGFGS
Sbjct:  360 LGLHGMKPVVAIYSTFLQRAYDQIIHDVALQNAPVLFAIDRSGVVGEDGPTHHGLFDMNYLLSVPNMKIISPSSPEEFVSSLYTVLKHLDGPVAIRYPKESFYGEVEFFLENMKEIDLG-WKILKRGREAAIIATGTIL-------NEVLKIPLDVTVVNALTVKPLDTTVLKEIAREHDLIITVEEAMKIGGFGS 547          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_THEP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.062e-35
Identity = 81/196 (41.33%), Postives = 119/196 (60.71%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGS 585
            L   G+KP  AIYS+FLQR YDQ+VHDV LQ  PV FA+D++G+VG DGPTH G FDI ++  +PNM +++PS   E +  + T     D P   R+P+ +  G V         +++G  +IL  G   AI+  G+++       N +    + VTV +A   KPLDT +++++A +H+I+ITVEE   +GGFGS
Sbjct:  360 LGLHGMKPVVAIYSTFLQRAYDQIVHDVALQNAPVLFAIDKSGVVGEDGPTHHGLFDINYLLPVPNMKIISPSSPEEFVSSLYTILKNLDGPVAIRYPKESFYGEVESILENMKKIDLG-WKILRRGKEAAIIATGTIL-------NEVLKIPLDVTVVNALTVKPLDTAVLKEIARDHDIIITVEEAMRIGGFGS 547          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_PSYA2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.062e-35
Identity = 90/208 (43.27%), Postives = 123/208 (59.13%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKG---RILMEGD---RVAILGYGSVVQQCVLAANM-----LKSQDISVTVADARFCKPLDTDLIRQLANEHEI-LITVEEGSV-GGFGS 585
            +A++GVKP  AIYS+FLQRGYDQ++HDV LQ L V FA+DRAGLVG DG TH G FD  F+ C+PNM++ AP DE E  H++ T        +  R+PRG G GA +          IGK     +L E D   ++A+L +G++V     AA M     L +    + V + R+ KPLDT L+ QL  +    + T+EE ++ GG GS
Sbjct:  418 MATQGVKPIVAIYSTFLQRGYDQLIHDVALQNLDVMFAIDRAGLVGEDGATHAGVFDFAFLRCVPNMMIAAPKDENECYHLLNTCYEYQG-CTAVRYPRGVGTGATI--TQPAQTYNIGKAVIESVLGEKDAPKKLALLAFGTMVATAQQAAEMIAKSPLLASSCQLHVVNMRWVKPLDTTLLEQLLLQGVTHIATLEEHTIMGGAGS 622          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_HELHP (1-deoxy-D-xylulose-5-phosphate synthase OS=Helicobacter hepaticus GN=dxs PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.917e-35
Identity = 79/198 (39.90%), Postives = 114/198 (57.58%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGI--GAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH-EILITVEEGSVGGFGS 585
            +A EG KPF AIYS+FLQR YDQ++HDV +  LPVRF +DRAG+VG DG TH G FDI ++  +P+MV+ AP D A L   VA A   +D P  FR+PRG+      V   N       +G+  +L  G ++ ++GYG+ V +       L ++    ++ D RF KPLD  ++ ++   H  I +  +   +GG  S
Sbjct:  383 IAKEGFKPFVAIYSTFLQRAYDQIIHDVGILGLPVRFCIDRAGIVGEDGETHQGLFDIAYLRSIPHMVLFAPRDNASLQQAVAFAYRYNDSPCAFRYPRGSFTLEEGVFVSNE----FVLGQAEMLKRGKKILLVGYGNGVGRAYKVYQALITEGYEPSLLDLRFVKPLDKHMLNEVFKTHTHICVFSDSYYMGGVAS 576          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CAMJD (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=dxs PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.034e-34
Identity = 82/198 (41.41%), Postives = 117/198 (59.09%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME-GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEI-LITVEEGSVGGFGSL 588
            +A EG KPF AIYS+FLQR YDQV+HD  +  L V FAMDRAG+VG DG TH G FD++F++ LPN  ++AP DE ++MH +   A +   P  FR+PRG+    +L        ++ GK + L++    +A LGYG  V +       L+  + +  + D  F KPLD +L+ +LA + +I  I  E   +GG  SL
Sbjct:  370 MAKEGFKPFIAIYSTFLQRAYDQVIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDE-QMMHNIMEYAYLHQGPIAFRYPRGS---FILDEEFNPCEIKFGKAQWLVKNSSEIAFLGYGQGVAKAWQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESL 563          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_DEIGD (1-deoxy-D-xylulose-5-phosphate synthase OS=Deinococcus geothermalis (strain DSM 11300) GN=dxs PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.929e-34
Identity = 84/196 (42.86%), Postives = 116/196 (59.18%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            +A +G++P  AIYS+FLQR YDQV+HDV ++ L V FA+DR G+VGADG TH G FD++++  +PN+ +  P D AEL  M+  A      P   R+PRGN       P      L  G    L +GD V IL  G  ++  + AA  L      V V +ARF KPLD  ++R++A +   L+TVE+ + VGGFGS
Sbjct:  387 MALQGMRPIVAIYSTFLQRAYDQVLHDVAIENLNVTFAIDRGGIVGADGATHNGVFDLSYLRSIPNVGIGLPKDAAELRGMLKYAQE-HAGPFAIRYPRGN---VERVPEGTWPELRWGTWERLQDGDDVVILAGGKALEYALKAARDLP----GVGVVNARFVKPLDQGMLREVATKARALVTVEDNTVVGGFGS 574          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CAMJ8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=dxs PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.929e-34
Identity = 81/198 (40.91%), Postives = 118/198 (59.60%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGD-RVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEI-LITVEEGSVGGFGSL 588
            +A EG KPF AIYS+FLQR YDQV+HD  +  L V FAMDRAG+VG DG TH G FD++F++ LPN  ++AP DE ++M  +   A +   P  FR+PRG+    +L        +++GK + L++ +  +A LGYG  V +       L+  + +  + D  F KPLD +L+ +LA + +I  I  E   +GG  SL
Sbjct:  370 MAKEGFKPFIAIYSTFLQRAYDQVIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDE-QMMQNIMEYAYLHQGPIAFRYPRGS---FILDKEFNPCEIKLGKAQWLVKNNSEIAFLGYGQGVAKAWQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESL 563          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CAMJR (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter jejuni (strain RM1221) GN=dxs PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.131e-34
Identity = 81/198 (40.91%), Postives = 117/198 (59.09%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME-GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEI-LITVEEGSVGGFGSL 588
            +A EG KPF AIYS+FLQR YDQV+HD  +  L V FAMDRAG+VG DG TH G FD++F++ LPN  ++AP DE ++M  +   A +   P  FR+PRG+    +L        +++GK + L++    +A LGYG  V +       L+  + +  + D  F KPLD +L+ +LA + +I  I  E   +GG  SL
Sbjct:  370 MAKEGFKPFIAIYSTFLQRAYDQVIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDE-QMMQNIMEYAYLHQGPIAFRYPRGS---FILDKEFNPCEIKLGKAQWLVKNSSEIAFLGYGQGVAKAWQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESL 563          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CAMJJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=dxs PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.131e-34
Identity = 81/198 (40.91%), Postives = 117/198 (59.09%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME-GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEI-LITVEEGSVGGFGSL 588
            +A EG KPF AIYS+FLQR YDQV+HD  +  L V FAMDRAG+VG DG TH G FD++F++ LPN  ++AP DE ++M  +   A +   P  FR+PRG+    +L        +++GK + L++    +A LGYG  V +       L+  + +  + D  F KPLD +L+ +LA + +I  I  E   +GG  SL
Sbjct:  370 MAKEGFKPFIAIYSTFLQRAYDQVIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDE-QMMQNIMEYAYLHQGPIAFRYPRGS---FILDKEFNPCEIKLGKAQWLVKNSSEIAFLGYGQGVAKAWQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESL 563          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_THET26.062e-3543.081-deoxy-D-xylulose-5-phosphate synthase OS=Thermus... [more]
DXS_THESQ6.062e-3540.821-deoxy-D-xylulose-5-phosphate synthase OS=Thermot... [more]
DXS_THEP16.062e-3541.331-deoxy-D-xylulose-5-phosphate synthase OS=Thermot... [more]
DXS_PSYA26.062e-3543.271-deoxy-D-xylulose-5-phosphate synthase OS=Psychro... [more]
DXS_HELHP7.917e-3539.901-deoxy-D-xylulose-5-phosphate synthase OS=Helicob... [more]
DXS_CAMJD1.034e-3441.411-deoxy-D-xylulose-5-phosphate synthase OS=Campylo... [more]
DXS_DEIGD3.929e-3442.861-deoxy-D-xylulose-5-phosphate synthase OS=Deinoco... [more]
DXS_CAMJ83.929e-3440.911-deoxy-D-xylulose-5-phosphate synthase OS=Campylo... [more]
DXS_CAMJR5.131e-3440.911-deoxy-D-xylulose-5-phosphate synthase OS=Campylo... [more]
DXS_CAMJJ5.131e-3440.911-deoxy-D-xylulose-5-phosphate synthase OS=Campylo... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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