CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ARCB4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Arcobacter butzleri (strain RM4018) GN=dxs PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.131e-34
Identity = 83/180 (46.11%), Postives = 111/180 (61.67%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEG-DRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH 537
            +A EG KPF  IYS+FLQRG+DQ++HDV L  LPV FAMDRAG+VG DG TH GAFDI+F+  +PNMV+ AP D   L   +  A  +++ P   R+PR    GA    N   TP  +GK  IL  G      +GYG+ V + +     L ++DI  TV D RF KPLD +L+ +L+ ++
Sbjct:  363 MAKEGFKPFITIYSTFLQRGFDQIIHDVCLMNLPVVFAMDRAGIVGNDGETHQGAFDISFLRFIPNMVLFAPRDNETLEQSLEFAYNLNN-PCAIRYPR----GAFKKLNFVPTPFVLGKAEILKTGISNKLFIGYGAGVSRAI-DTEALHNEDI--TVVDLRFVKPLDKNLLLELSKKY 534          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_PSYCK (1-deoxy-D-xylulose-5-phosphate synthase OS=Psychrobacter cryohalolentis (strain K5) GN=dxs PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.753e-34
Identity = 87/206 (42.23%), Postives = 122/206 (59.22%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGA-VLPPNNKGTPLEIGKGRILMEGD---RVAILGYGSVVQQCVLAANM-----LKSQDISVTVADARFCKPLDTDLIRQLANEHEI-LITVEEGSV-GGFGS 585
            +A++GVKP  AIYS+FLQRGYDQ++HDV LQ L V FA+DRAGLVG DG TH G FD  F+ C+PNM++ AP DE E  H++ T        +  R+PRG G GA ++ P       E     +L   D   ++A+L +G++V+    AA M     L +    + V + R+ KPLDT+L+  L  +    + T+EE  + GG GS
Sbjct:  418 MATQGVKPIVAIYSTFLQRGYDQLIHDVALQNLDVMFAIDRAGLVGEDGATHAGVFDFAFLRCVPNMLIAAPKDENECYHLLNTCYEYQG-CTAVRYPRGVGTGATIIQPAQIYNIGEAVIESVLGTDDAPKKLALLAFGTMVETAQKAAEMIAKSPLLASSCQLHVVNMRWVKPLDTNLLETLVEQGVTHIATLEEHMIMGGAGS 622          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_HELPG (1-deoxy-D-xylulose-5-phosphate synthase OS=Helicobacter pylori (strain G27) GN=dxs PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.753e-34
Identity = 74/197 (37.56%), Postives = 113/197 (57.36%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGI--GAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            +A EG KPF +IYS+FLQR YD +VHD  +  LP++ A+DRAG+VG DG TH G  D++++  +PNMV+ AP D   L + V  A   D  P  FR+PRG+ +    V  P+       +G+  +L +   + ++GYG+ V +  L    LK ++I   + D RF KPLD +L   +A   ++ +  +   +GG  S
Sbjct:  370 MAKEGFKPFVSIYSTFLQRAYDSIVHDACISSLPIKLAIDRAGIVGEDGETHQGLLDVSYLRSIPNMVIFAPRDNETLKNAVRFANEHDSSPCAFRYPRGSFVLKEGVFEPSG----FVLGQSELLKKEGEILLIGYGNGVGRAHLVQLALKEKNIECALLDLRFLKPLDPNLSAIVAPYQKLYVFSDNYKLGGVAS 562          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_DEIRA (1-deoxy-D-xylulose-5-phosphate synthase OS=Deinococcus radiodurans GN=dxs PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.143e-33
Identity = 84/195 (43.08%), Postives = 114/195 (58.46%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFG 582
            +A +G++P  AIYS+FLQR YDQV+HDV ++ L V F +DRAG+VGADG TH G FD++F+  +P + +  P D AEL  M+  A    D P   R+PRGN       P      L+ G+   L  GD V IL  G  +   + AA  L      V V +ARF KPLD +++R++      LITVE+ + VGGFG
Sbjct:  383 MALQGMRPVVAIYSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQT-HDGPFAIRYPRGN---TAQVPAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP----GVGVVNARFVKPLDEEMLREVGGRARALITVEDNTVVGGFG 569          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_HELPH (1-deoxy-D-xylulose-5-phosphate synthase OS=Helicobacter pylori (strain HPAG1) GN=dxs PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.493e-33
Identity = 74/197 (37.56%), Postives = 112/197 (56.85%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGI--GAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            +A EG KPF +IYS+FLQR YD +VHD  +  LP++ A+DRAG+VG DG TH G  D++++  +PNMV+ AP D   L + V  A   D  P  FR+PRG+      V  P+       +G+  +L +   + ++GYG+ V +  L    LK ++I   + D RF KPLD +L   +A   ++ +  +   +GG  S
Sbjct:  370 MAKEGFKPFVSIYSTFLQRAYDSIVHDACISSLPIKLAIDRAGIVGEDGETHQGLLDVSYLRSIPNMVIFAPRDNETLKNAVRFANEHDSSPCAFRYPRGSFALKEGVFEPSG----FVLGRSELLKKEGEILLIGYGNGVGRAHLVQLALKEKNIECALLDLRFLKPLDPNLSAIIAPYQKLYVFSDNYKLGGVAS 562          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CAMJE (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter jejuni GN=dxs PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.950e-33
Identity = 80/198 (40.40%), Postives = 117/198 (59.09%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGD-RVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEI-LITVEEGSVGGFGSL 588
            +A EG KPF AIYS+FLQR YDQV+HD  +  L V FAMDRAG+VG DG TH G FD++F++ LPN  ++AP DE ++M  +   A +   P   R+PRG+    +L        +++GK + L++ +  +A LGYG  V +       L+  + +  + D  F KPLD +L+ +LA + +I  I  E   +GG  SL
Sbjct:  370 MAKEGFKPFIAIYSTFLQRAYDQVIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDE-QMMQNIMEYAYLHQGPIALRYPRGS---FILDKEFNPCEIKLGKAQWLVKNNSEIAFLGYGQGVAKAWQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESL 563          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_HELPY (1-deoxy-D-xylulose-5-phosphate synthase OS=Helicobacter pylori GN=dxs PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.547e-33
Identity = 74/197 (37.56%), Postives = 112/197 (56.85%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGI--GAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            +A EG KPF +IYS+FLQR YD +VHD  +  LP++ A+DRAG+VG DG TH G  D++++  +PNMV+ AP D   L + V  A   D  P  FR+PRG+      V  P+       +G+  +L +   + ++GYG+ V +  L    LK ++I   + D RF KPLD +L   +A   ++ +  +   +GG  S
Sbjct:  370 MAKEGFKPFVSIYSTFLQRAYDSIVHDACISSLPIKLAIDRAGIVGEDGETHQGLLDVSYLRSIPNMVIFAPRDNETLKNAVRFANEHDSSPCAFRYPRGSFALKEGVFEPSG----FVLGQSELLKKEGEILLIGYGNGVGRAHLVQLALKEKNIECALLDLRFLKPLDPNLSAIVAPYQKLYVFSDNYKLGGVAS 562          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_HELPJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Helicobacter pylori J99 GN=dxs PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.547e-33
Identity = 74/197 (37.56%), Postives = 112/197 (56.85%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGI--GAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            +A EG KPF +IYS+FLQR YD +VHD  +  LP++ A+DRAG+VG DG TH G  D++++  +PNMV+ AP D   L + V  A   D  P  FR+PRG+      V  P+       +G+  +L +   + ++GYG+ V +  L    LK ++I   + D RF KPLD +L   +A   ++ +  +   +GG  S
Sbjct:  370 MAKEGFKPFVSIYSTFLQRAYDSIVHDACISSLPIKLAIDRAGIVGEDGETHQGLLDVSYLRSIPNMVIFAPRDNETLKNAVYFANEHDSSPCAFRYPRGSFALKEGVFEPSG----FVLGRSELLKKEGEILLIGYGNGVGRAHLVQLALKEKNIECALLDLRFLKPLDHNLSAIIAPYQKLYVFSDNYKLGGVAS 562          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_WOLSU (1-deoxy-D-xylulose-5-phosphate synthase OS=Wolinella succinogenes GN=dxs PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.651e-32
Identity = 80/197 (40.61%), Postives = 113/197 (57.36%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEG-DRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            LA EG KPF AIYS+FLQR YDQ++HDV + KLPV+FA+DR G+VG DG TH G  DI ++  +P+M +MAP     L   V  A      P  FR+PR + +  +       +P   GK   LMEG D V  +G+G+ V +    + ++ S +  V + D RF KPLD + + +L+ E+   +   + S VGG  S
Sbjct:  363 LAKEGYKPFVAIYSTFLQRAYDQIIHDVGIMKLPVKFAIDRGGIVGEDGETHQGILDIGYLRLIPHMTLMAPRSNESLKEAVKFAKDFSLGPIAFRYPRKSFV--LQEGIFSESPFLYGKAERLMEGKDEVLFVGFGNGVGRAYEVSKVMAS-EYEVGLVDLRFVKPLDHETLWELSKEYRYWLVFSDASKVGGVAS 556          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_AZOPC (1-deoxy-D-xylulose-5-phosphate synthase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=dxs PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.816e-32
Identity = 69/196 (35.20%), Postives = 113/196 (57.65%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA EG+ PFC +YSSF+QR YD ++HD  LQ L +   +DRAGLVG DG TH G  D+ ++ C+PN+ + AP +E +L +++ T A+  +    F      G G +         L +GKGR L EG  +A++  G++      A  +++   ISV   D  + KP+D +L+ ++   +  ++ +E+G++ GG G+
Sbjct:  386 LAKEGMIPFCNVYSSFMQRAYDNIIHDAVLQNLNMILCLDRAGLVGEDGVTHHGVLDLAYLRCIPNITITAPLNEKDLRNLMFT-AIQPNAKGVFVIRYPKGYGELKNWEYSFEALPVGKGRKLKEGKEIAVVSIGTIGNLARKAIRLVEKLGISVAHYDMIYLKPIDEELLHEIGKNYRCVVVIEDGTIKGGLGT 580          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_ARCB45.131e-3446.111-deoxy-D-xylulose-5-phosphate synthase OS=Arcobac... [more]
DXS_PSYCK8.753e-3442.231-deoxy-D-xylulose-5-phosphate synthase OS=Psychro... [more]
DXS_HELPG8.753e-3437.561-deoxy-D-xylulose-5-phosphate synthase OS=Helicob... [more]
DXS_DEIRA1.143e-3343.081-deoxy-D-xylulose-5-phosphate synthase OS=Deinoco... [more]
DXS_HELPH1.493e-3337.561-deoxy-D-xylulose-5-phosphate synthase OS=Helicob... [more]
DXS_CAMJE1.950e-3340.401-deoxy-D-xylulose-5-phosphate synthase OS=Campylo... [more]
DXS_HELPY2.547e-3337.561-deoxy-D-xylulose-5-phosphate synthase OS=Helicob... [more]
DXS_HELPJ2.547e-3337.561-deoxy-D-xylulose-5-phosphate synthase OS=Helicob... [more]
DXS_WOLSU1.651e-3240.611-deoxy-D-xylulose-5-phosphate synthase OS=Wolinel... [more]
DXS_AZOPC2.816e-3235.201-deoxy-D-xylulose-5-phosphate synthase OS=Azobact... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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