CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CLOB8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=dxs PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.803e-32
Identity = 74/196 (37.76%), Postives = 119/196 (60.71%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +AS G+KP  A+YS+FLQR +DQV+HDV +Q LPV FA+DRAG+VG DG TH G  D++++S +PN+ ++ P    E + ++   A+  + P   R+P+G  I   L P  +   +  G+  I+  G +V I+  G +VQ  ++A   L  + ++ TV +A F KP+D  L+  +  E   ++T+E+  + GG GS
Sbjct:  374 MASNGLKPVFAVYSTFLQRAFDQVLHDVCIQNLPVVFAIDRAGIVGEDGETHQGINDLSYLSMIPNIHIVVPKC-LEEVDVLLKWAINKNAPVAIRYPKGGNIIDTLSPIKE---VVEGQWEIVNRGSKVCIIATGRMVQHAMIAKEFLYEKGLNPTVINATFVKPIDKKLLENIKKEGYNILTIEDNIIKGGLGS 565          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_PARUW (1-deoxy-D-xylulose-5-phosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=dxs PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.018e-30
Identity = 73/195 (37.44%), Postives = 114/195 (58.46%), Query Frame = 1
Query:   16 VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPL---EIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSL 588
            +K   +IY++FLQR +D V HD+ LQ+LPV FA+DRAG+ G DG TH G +DI+F++ +PNM++  P +  +++  +  +A    RP+  R+P        L       P+   E+GKG +L+EG  + I+  G + Q  +   ++L    I  TV D  F KPLD++L  +L   H  ++T+EE S V G GS+
Sbjct:  385 MKIVASIYATFLQRAFDNVFHDICLQELPVVFAIDRAGISGPDGSTHHGIYDISFLNAMPNMIIAQPRN-GQVLKELMESAFSWKRPTAIRYPN-------LMTEEFNHPICERELGKGEVLIEGTEILIVALGHMNQAALKVRDLLAQTGIEATVLDPIFVKPLDSELFCKLLLNHNKIVTIEEHSVVSGMGSI 571          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_STRGG (1-deoxy-D-xylulose-5-phosphate synthase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=dxs PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.001e-29
Identity = 70/196 (35.71%), Postives = 114/196 (58.16%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            LA+ G+ P  A+Y++FL R +DQV+ DV L K  V F +DRAG+ G DG +H G +D++ + C+P + + AP D  ++   +  A  +DD P+  RF +G  +G  +    +   ++I +       D V I+  G++   C+  A++L +Q IS TV D R+ KP+D + +  LA  H +++TVE+ S  GG GS
Sbjct:  376 LATGGLHPVFAVYATFLNRAFDQVLMDVALHKCGVTFVLDRAGITGTDGASHNGMWDMSILQCVPTLRIAAPRDADQVRAQLREAVAVDDAPTVVRFSKG-AVGPAVKAVGRAGGMDILRRPTAARPD-VLIVSVGALAPMCLEIADLLDAQGISSTVVDPRWVKPVD-EALAPLAERHRVVVTVEDNSRAGGVGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_TREPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=dxs PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.308e-29
Identity = 75/197 (38.07%), Postives = 111/197 (56.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKG--TPLEIGKGRILMEGD--RVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGG 576
            LA  GVKP  A+YS+FLQR  DQV+HDV +Q LPV FA+DRAG V  DG TH G FD++ +  +PN+ ++ P+   EL  ++   A+  D P   R+P+     A+ PP   G  TP+  G+G ++   +   V ++  G V  +   AAN L  + I   + + RF KP+D D    L   +  ++ VE+G  +GG
Sbjct:  377 LACAGVKPVVAVYSTFLQRAVDQVIHDVAVQNLPVIFALDRAGAVPHDGETHQGLFDLSILRAVPNINILCPASAHEL-SLLFGWALAQDTPVAIRYPK-----ALCPPEEDGFSTPVHTGRGVLITRENECNVLLVCTGGVFPEVTAAANTLARKGIFADIYNVRFVKPVDEDYFLDLVGRYRSVLFVEDGVKIGG 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_TREPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Treponema pallidum GN=dxs PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.308e-29
Identity = 75/197 (38.07%), Postives = 111/197 (56.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKG--TPLEIGKGRILMEGD--RVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGG 576
            LA  GVKP  A+YS+FLQR  DQV+HDV +Q LPV FA+DRAG V  DG TH G FD++ +  +PN+ ++ P+   EL  ++   A+  D P   R+P+     A+ PP   G  TP+  G+G ++   +   V ++  G V  +   AAN L  + I   + + RF KP+D D    L   +  ++ VE+G  +GG
Sbjct:  377 LACAGVKPVVAVYSTFLQRAVDQVIHDVAVQNLPVIFALDRAGAVPHDGETHQGLFDLSILRAVPNINILCPASAHEL-SLLFGWALAQDTPVAIRYPK-----ALCPPEEDGFSTPVHTGRGVLITRENECNVLLVCTGGVFPEVTAAANTLARKGIFADIYNVRFVKPVDEDYFLDLVGRYRSVLFVEDGVKIGG 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYCA9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=dxs PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.708e-29
Identity = 73/197 (37.06%), Postives = 115/197 (58.38%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEI-GKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G+ P  AIYS+FL R +DQV+ DV L +LPV F +DRAG+ G+DG +H G +D++ ++ +P M V AP D + L   +  A  +DD P+  RFP+G  +G  +P   +   ++I  +    +  D V ++  GS     +  A+ L  Q I VTV D R+  P+   ++ +LA +H +++T+E+  V GG GS
Sbjct:  376 LAMGGLHPVVAIYSTFLNRAFDQVMMDVALHRLPVTFVLDRAGITGSDGASHNGMWDLSILNVVPGMRVAAPRDASRLREELTEALAVDDGPTALRFPKGE-VGEDIPAIERRDGVDILARPASGLHAD-VLLVAVGSFASTALATADRLGKQGIGVTVVDPRWVLPVPPHVV-ELAGQHRLVVTLEDSGVHGGAGS 569          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_TREDE (1-deoxy-D-xylulose-5-phosphate synthase OS=Treponema denticola GN=dxs PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.914e-29
Identity = 72/199 (36.18%), Postives = 115/199 (57.79%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGD--RVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSLY 591
            LAS G+KP  AIYS+FLQR  DQ++HD  +Q LPV FA+DRAG V ADG TH G FDI  +  +PNM ++ P+ E EL  ++ + A++ D P   R+P+ +     +P  ++   +E G+G ++   D  R+ I   G +  +   A+ +L  + +S  + + RF KP+D +    +  ++  ++ VE+G   G  S Y
Sbjct:  378 LASAGMKPVTAIYSTFLQRSIDQIIHDTSIQNLPVIFAIDRAGPVPADGETHQGLFDIALLRPVPNMTILCPASEKEL-ELMLSWALMQDNPIAIRYPKAD-CPKEIPEFSQS--IEKGRGVLIKNSDKSRILITCTGGMYNEVKEASAILAHRGLSTDIYNVRFAKPIDENYFLNITKDYSYILFVEDGMKIGSLSSY 572          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS2_STRCO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Streptomyces coelicolor GN=dxs2 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.914e-29
Identity = 71/196 (36.22%), Postives = 114/196 (58.16%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            LA  GV P  A+Y++FL R +DQV+ DV L K  V F +DRAG+ G DG +H G +D++ +  +P + + AP D  ++   +  A V+DD P+  RF +G  +G  +P   +   +++ +       D V ++  G++   C+  A++L  Q IS TV D R+ KP+D + +  LA  H +++TVE+ S VGG GS
Sbjct:  376 LAHGGVHPVFAVYATFLNRAFDQVLMDVALHKCGVTFVLDRAGVTGTDGASHNGMWDMSILQVVPGLRLAAPRDADQVRAQLREAVVVDDAPTVVRFSKG-AVGPAVPAVGRVGGMDVLRAPGTGTPD-VLLVSVGALAPMCLEVADLLNKQGISTTVVDPRWVKPVD-EAMAPLAERHRVVVTVEDNSRVGGVGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYCS2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium smegmatis GN=dxs PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.970e-29
Identity = 71/196 (36.22%), Postives = 113/196 (57.65%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGS 585
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DRAG+ G DG +H G +D++ +  +P + V AP D A L   +  A  ++D P+  RFP+G+ +G  +P   +   +++           V ++  GS  +  +  A +L+SQ I VTV D R+  P+  + +  LA +H++++TVE+ G  GG GS
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQLMMDVALHKLPVTMVLDRAGITGPDGASHNGMWDLSILGIIPGIRVAAPRDGARLRAELGEALAVNDGPTAIRFPKGD-VGEDIPAVQRRDGVDVLAVPATGLTHDVLLVAVGSFAKMALAVAELLRSQGIGVTVVDPRWVLPV-PEALADLARDHKLVVTVEDNGLHGGIGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_FRASC (1-deoxy-D-xylulose-5-phosphate synthase OS=Frankia sp. (strain CcI3) GN=dxs PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.970e-29
Identity = 71/196 (36.22%), Postives = 110/196 (56.12%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGS 585
            LA  G+KP   +Y++FL R +DQV+ DV L + PV F +DRAG+ G DG +H G +D++F+  +P + + AP D   L   +  A    D P+  RFP+G     V   +  G    + +   + +   V ++  G++   C+  A  + SQ I +TV D R+ KPLD  LI  LA  H++++TVE+ G VGG G+
Sbjct:  377 LAMGGLKPVVCLYATFLNRAFDQVLMDVALHRQPVTFVLDRAGITGEDGASHNGMWDLSFLQVVPGLAIAAPRDAPTLRAELREAVGDTDGPTVVRFPKGKVAVDVPAIDTVGGVDVLYRSPKVAQRREVLLVSIGAMAATCLEVAERVASQGIGITVVDPRWVKPLDPALI-DLARAHDLVVTVEDNGRVGGVGA 571          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_CLOB84.803e-3237.761-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_PARUW2.018e-3037.441-deoxy-D-xylulose-5-phosphate synthase OS=Protoch... [more]
DXS_STRGG1.001e-2935.711-deoxy-D-xylulose-5-phosphate synthase OS=Strepto... [more]
DXS_TREPS1.308e-2938.071-deoxy-D-xylulose-5-phosphate synthase OS=Trepone... [more]
DXS_TREPA1.308e-2938.071-deoxy-D-xylulose-5-phosphate synthase OS=Trepone... [more]
DXS_MYCA91.708e-2937.061-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_TREDE2.914e-2936.181-deoxy-D-xylulose-5-phosphate synthase OS=Trepone... [more]
DXS2_STRCO2.914e-2936.221-deoxy-D-xylulose-5-phosphate synthase 2 OS=Strep... [more]
DXS_MYCS24.970e-2936.221-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_FRASC4.970e-2936.221-deoxy-D-xylulose-5-phosphate synthase OS=Frankia... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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