CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_THEFY (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermobifida fusca (strain YX) GN=dxs PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.478e-29
Identity = 71/200 (35.50%), Postives = 107/200 (53.50%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRIL------MEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFG 582
            LA  G+ P  A+Y++FL R +DQV+ DV L + PV FA+DRAG+ G DG +H G +D++ +  +PN+ +  P D   L  ++  A  IDD P+  R+P+G     V+PP       +IG   +L       E   + ++  G + Q C   A+ L  Q I VTV D R+ KPLD  L+ + A    + +  + G VG  G
Sbjct:  377 LAMGGLHPVVAVYATFLNRCFDQVLMDVALHRQPVTFALDRAGITGDDGASHNGMWDLSILQVVPNLSIAVPRDAVRLRELLREAISIDDGPTVVRYPKG-----VVPPAIPAVD-QIGGMDVLRRPASGTEAPDLLLVAVGPMAQTCCEVADRLADQGIGVTVVDPRWVKPLDPALVSEAARHSVVAVVEDNGRVGAVG 570          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYCPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium paratuberculosis GN=dxs PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.107e-28
Identity = 75/201 (37.31%), Postives = 114/201 (56.72%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPP-NNKGTPLEIGKGRILMEGD----RVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G+ P  AIYS+FL R +DQ++ DV L +LPV   +DRAG+ G+DG +H G +D++ +  +P M V AP D A L   +  A  +DD P+  RFP+G+ +G  +P    +G+ L  G   + +        V ++G G+     +  A  L  Q I VTV D R+  P+ +D I +LA  H++++T E+  V GG GS
Sbjct:  375 LAMGGMHPVVAIYSTFLNRAFDQIMMDVALHRLPVTMVLDRAGITGSDGASHNGMWDLSILGVVPGMRVAAPRDAARLREELGEALDVDDGPTALRFPKGD-VGEDIPAIERRGSGLS-GVDVLALPASGCNHDVLLIGVGAFAPMALAVARRLADQGIGVTVVDPRWVLPV-SDSILELAARHKLVVTCEDNGVNGGVGS 572          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYCA1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium avium (strain 104) GN=dxs PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.107e-28
Identity = 75/201 (37.31%), Postives = 114/201 (56.72%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPP-NNKGTPLEIGKGRILMEGD----RVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G+ P  AIYS+FL R +DQ++ DV L +LPV   +DRAG+ G+DG +H G +D++ +  +P M V AP D A L   +  A  +DD P+  RFP+G+ +G  +P    +G+ L  G   + +        V ++G G+     +  A  L  Q I VTV D R+  P+ +D I +LA  H++++T E+  V GG GS
Sbjct:  375 LAMGGMHPVVAIYSTFLNRAFDQIMMDVALHRLPVTMVLDRAGITGSDGASHNGMWDLSILGVVPGMRVAAPRDAARLREELGEALDVDDGPTALRFPKGD-VGEDIPAIERRGSGLS-GVDVLALPASGCNHDVLLIGVGAFAPMALAVARRLADQGIGVTVVDPRWVLPV-SDSILELAARHKLVVTCEDNGVNGGVGS 572          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_FRASN (1-deoxy-D-xylulose-5-phosphate synthase OS=Frankia sp. (strain EAN1pec) GN=dxs PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.107e-28
Identity = 69/196 (35.20%), Postives = 109/196 (55.61%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGS 585
            LA  G+KP   IY++FL R +DQV+ DV + + PV F +DRAG+ G DG +H G +D++F+  +P + + AP D A L   +  A    D P+  R+P+G         +  G    + +         V ++  G++   C+  A  + SQ I +TV D R+ KPLD  L+  LA +H++++TVE+ G VGG G+
Sbjct:  377 LAMGGLKPVVCIYATFLNRAFDQVLMDVAMHRQPVTFVLDRAGITGEDGASHNGMWDMSFLQVVPGLAIAAPRDAATLRAELDEAVSNTDGPTVVRYPKGKVAADSPAIDQVGGVDVLYRAPAAARHREVLLVSIGAMAPTCLDVAERVASQGIGITVVDPRWVKPLDPALV-DLARDHDLVVTVEDNGRVGGVGA 571          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYCUA (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium ulcerans (strain Agy99) GN=dxs PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.446e-28
Identity = 70/196 (35.71%), Postives = 111/196 (56.63%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G+ P  AIYS+FL R +DQ++ DV L +LPV   +DRAG+ G+DGP+H G +D++ +  +P + V AP D   L   +  A  +DD P+  RFP+G+ +G  +P   +   +++           V ++  G++    +  A  L +Q I VTV D R+  P+  D I  LA  H++++T+E+  V GG GS
Sbjct:  375 LAMGGMHPVVAIYSTFLNRAFDQIMMDVALHQLPVTMVLDRAGITGSDGPSHNGMWDLSMLGIIPGIRVAAPRDATRLREELGEALDVDDGPTALRFPKGD-VGEDIPALERRDGMDVLAVPASGLNHDVLLIAVGALASMALAVAKRLHNQGIGVTVIDPRWVLPV-ADGIGDLAVAHKLVVTLEDNGVNGGVGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYCGI (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium gilvum (strain PYR-GCK) GN=dxs PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.889e-28
Identity = 73/196 (37.24%), Postives = 109/196 (55.61%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGS 585
            LA  G+ P  A+YS+FL R +DQ++ DV L KLPV   +DR+G+ G DG +H G +D++ +  +P M V AP D A L   +A A  + D P+  RFP+G+ +G  +P   +   +++         D V I+  G+     V  A  L+ Q I VTV D R+  P+    I  LA  H++++TVE+ G  GG GS
Sbjct:  375 LAMGGMHPVVALYSTFLNRAFDQMLMDVALHKLPVTMVLDRSGITGPDGASHNGMWDLSILGIVPGMRVAAPRDGARLREELAEAVEVKDGPTAVRFPKGD-VGEDIPAIERRDGVDVLAVPADGLSDDVLIIAVGAFAAMSVAVAERLRDQGIGVTVVDPRWVLPVPA-AINTLAAAHKLVVTVEDNGGHGGVGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CHLMU (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia muridarum GN=dxs PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.222e-28
Identity = 68/192 (35.42%), Postives = 108/192 (56.25%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGG 576
            +A  G    C+IYS+FL R  D V HDV +Q+LPV FA+DRAGL   DG +H G +D+ F+  +PNMVV  P + A ++  +  ++++   P   R+P  +    V  P+   +P+  G+  +L +GD + ++  G +    +     L    IS TV D  F KPLDT+L++ L + H  ++ +EE S+ G
Sbjct:  380 IARSGTPVVCSIYSTFLNRAMDNVFHDVCMQELPVIFAIDRAGLAFHDGRSHHGIYDLGFLCSMPNMVVCQPRN-ASVLERLLFSSLLWKSPCAIRYPNLSTRKEVSNPS--FSPIFPGEAEVLCQGDDLLLIALGHMCDTALAVKEQLLDHGISTTVVDPIFIKPLDTELLQTLLSHHSKVVVLEEHSIHG 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYCTU (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium tuberculosis GN=dxs PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.208e-28
Identity = 70/196 (35.71%), Postives = 112/196 (57.14%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DRAG+ G+DG +H G +D++ +  +P + V AP D   L   +  A  +DD P+  RFP+G+ +G  +    +   +++           V ++  G+     +  A  L +Q I VTV D R+  P+ +D +R+LA +H++L+T+E+  V GG GS
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQIMMDVALHKLPVTMVLDRAGITGSDGASHNGMWDLSMLGIVPGIRVAAPRDATRLREELGEALDVDDGPTALRFPKGD-VGEDISALERRGGVDVLAAPADGLNHDVLLVAIGAFAPMALAVAKRLHNQGIGVTVIDPRWVLPV-SDGVRELAVQHKLLVTLEDNGVNGGAGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYCTA (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=dxs PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.208e-28
Identity = 70/196 (35.71%), Postives = 112/196 (57.14%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DRAG+ G+DG +H G +D++ +  +P + V AP D   L   +  A  +DD P+  RFP+G+ +G  +    +   +++           V ++  G+     +  A  L +Q I VTV D R+  P+ +D +R+LA +H++L+T+E+  V GG GS
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQIMMDVALHKLPVTMVLDRAGITGSDGASHNGMWDLSMLGIVPGIRVAAPRDATRLREELGEALDVDDGPTALRFPKGD-VGEDISALERRGGVDVLAAPADGLNHDVLLVAIGAFAPMALAVAKRLHNQGIGVTVIDPRWVLPV-SDGVRELAVQHKLLVTLEDNGVNGGAGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYCBT (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=dxs PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.208e-28
Identity = 70/196 (35.71%), Postives = 112/196 (57.14%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DRAG+ G+DG +H G +D++ +  +P + V AP D   L   +  A  +DD P+  RFP+G+ +G  +    +   +++           V ++  G+     +  A  L +Q I VTV D R+  P+ +D +R+LA +H++L+T+E+  V GG GS
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQIMMDVALHKLPVTMVLDRAGITGSDGASHNGMWDLSMLGIVPGIRVAAPRDATRLREELGEALDVDDGPTALRFPKGD-VGEDISALERRGGVDVLAAPADGLNHDVLLVAIGAFAPMALAVAKRLHNQGIGVTVIDPRWVLPV-SDGVRELAVQHKLLVTLEDNGVNGGAGS 568          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_THEFY8.478e-2935.501-deoxy-D-xylulose-5-phosphate synthase OS=Thermob... [more]
DXS_MYCPA1.107e-2837.311-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCA11.107e-2837.311-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_FRASN1.107e-2835.201-deoxy-D-xylulose-5-phosphate synthase OS=Frankia... [more]
DXS_MYCUA1.446e-2835.711-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCGI1.889e-2837.241-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_CHLMU3.222e-2835.421-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_MYCTU4.208e-2835.711-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCTA4.208e-2835.711-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCBT4.208e-2835.711-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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