CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYCBP (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=dxs PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.208e-28
Identity = 70/196 (35.71%), Postives = 112/196 (57.14%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DRAG+ G+DG +H G +D++ +  +P + V AP D   L   +  A  +DD P+  RFP+G+ +G  +    +   +++           V ++  G+     +  A  L +Q I VTV D R+  P+ +D +R+LA +H++L+T+E+  V GG GS
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQIMMDVALHKLPVTMVLDRAGITGSDGASHNGMWDLSMLGIVPGIRVAAPRDATRLREELGEALDVDDGPTALRFPKGD-VGEDISALERRGGVDVLAAPADGLNHDVLLVAIGAFAPMALAVAKRLHNQGIGVTVIDPRWVLPV-SDGVRELAVQHKLLVTLEDNGVNGGAGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYCBO (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium bovis GN=dxs PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.208e-28
Identity = 70/196 (35.71%), Postives = 112/196 (57.14%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DRAG+ G+DG +H G +D++ +  +P + V AP D   L   +  A  +DD P+  RFP+G+ +G  +    +   +++           V ++  G+     +  A  L +Q I VTV D R+  P+ +D +R+LA +H++L+T+E+  V GG GS
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQIMMDVALHKLPVTMVLDRAGITGSDGASHNGMWDLSMLGIVPGIRVAAPRDATRLREELGEALDVDDGPTALRFPKGD-VGEDISALERRGGVDVLAAPADGLNHDVLLVAIGAFAPMALAVAKRLHNQGIGVTVIDPRWVLPV-SDGVRELAVQHKLLVTLEDNGVNGGAGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS2_STRAW (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Streptomyces avermitilis GN=dxs2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.208e-28
Identity = 72/200 (36.00%), Postives = 113/200 (56.50%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            LA+ G+ P  A+Y++FL R +DQV+ DV L K  V F +DRAG+ G DG +H G +D++ +  +P + + AP D  ++   +  A  +DD P+  RF +G  +G  +P   +     IG   +L E       V ++  G++   C+  A +L  Q IS TV D R+ KP+D + +  LA  H +++TVE+ S VGG GS
Sbjct:  376 LATGGLHPVFAVYATFLNRAFDQVLMDVALHKCGVTFVLDRAGVTGTDGASHNGMWDMSILQVVPGLRLAAPRDADQVRAQLREAVDVDDAPTVVRFSKG-AVGPAVPAVGR-----IGGMDVLREPGTDAPDVLLVSVGALAPMCLEIAGLLDKQGISATVVDPRWVKPVD-EAMAPLAERHRVVVTVEDNSRVGGVGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_NOCSJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=dxs PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.495e-28
Identity = 70/199 (35.18%), Postives = 112/199 (56.28%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDR--VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSL 588
            LA  G+ P  A+Y +FL R +DQV+ DV L K  V F +DR+G+ G DG +H G +D++ +  +P + + AP D A L  ++  A  +DD P+  RFP+G+      PP +       G   IL+      V ++  G++    V  A  L +Q I VTV D R+ KP+D  ++ +LA EH +++++E+ G  GG G++
Sbjct:  376 LAMGGMHPVVALYGTFLNRAFDQVLMDVALHKCGVTFVLDRSGVTGDDGASHNGMWDMSILQVVPGLRLAAPRDPARLRELLNEAVEVDDAPTVVRFPKGS------PPEDIEAVDRAGGADILVRNGTKDVLVVAVGAMGTTAVDVAQRLTAQGIGVTVVDPRWVKPVDPAIV-ELAREHRLVVSIEDNGETGGCGAV 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS2_KITGR (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Kitasatospora griseola GN=dxs2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.495e-28
Identity = 71/199 (35.68%), Postives = 113/199 (56.78%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVA---ILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGS 585
            LA+ G+ P  A+Y++FL R +DQV+ DV L KL V F +DRAG+ G DG +H G +D++ +  +P + + AP D  ++   +  A  + D P+  R+ +GN +G  +P       +++ +       D  A   I+  G++   C+ AA +L  Q IS TV D R+ KP+D  L   LA +H +++TVE+ G  GG GS
Sbjct:  377 LATNGLHPVVAVYATFLNRAFDQVLMDVALHKLGVTFVLDRAGVTGTDGASHNGMWDMSILQVVPGLRLAAPRDAEQVRLQLREAVEVADAPTVVRYSKGN-VGPAVPAVGTVGGMDVLRRPEADSADEAADVLIVSIGAMAPTCLEAAELLAQQGISSTVVDPRWVKPVDAAL-PGLAAQHRLVVTVEDNGRAGGVGS 573          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYCLE (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium leprae GN=dxs PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 9.373e-28
Identity = 67/192 (34.90%), Postives = 108/192 (56.25%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGG 576
            LA   + P  AIYS+FL R +DQ++ DV L KLPV   +DRAG+ G+DGP+H G +D++ +  +P M V AP D   L   +  A  +DD P+  RFP+G+ +   +P   + + +++           V ++G G      +  A  L +Q I VTV D R+  P+  D + +LA+ H++++T+E+  V G
Sbjct:  375 LAMGRMHPVVAIYSTFLNRAFDQIMMDVALHKLPVTMVIDRAGITGSDGPSHNGMWDLSMLGIVPGMRVAAPRDAIRLREELGEALDVDDGPTAIRFPKGD-VCEDIPALKRRSGVDVLAVPATGLAQDVLLVGVGVFASMALAVAKRLHNQGIGVTVIDPRWVLPV-CDGVLELAHTHKLIVTLEDNGVNG 564          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYCLB (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium leprae (strain Br4923) GN=dxs PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.373e-28
Identity = 67/192 (34.90%), Postives = 108/192 (56.25%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGG 576
            LA   + P  AIYS+FL R +DQ++ DV L KLPV   +DRAG+ G+DGP+H G +D++ +  +P M V AP D   L   +  A  +DD P+  RFP+G+ +   +P   + + +++           V ++G G      +  A  L +Q I VTV D R+  P+  D + +LA+ H++++T+E+  V G
Sbjct:  375 LAMGRMHPVVAIYSTFLNRAFDQIMMDVALHKLPVTMVIDRAGITGSDGPSHNGMWDLSMLGIVPGMRVAAPRDAIRLREELGEALDVDDGPTAIRFPKGD-VCEDIPALKRRSGVDVLAVPATGLAQDVLLVGVGVFASMALAVAKRLHNQGIGVTVIDPRWVLPV-CDGVLELAHTHKLIVTLEDNGVNG 564          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYCSS (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium sp. (strain MCS) GN=dxs PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.599e-27
Identity = 69/196 (35.20%), Postives = 110/196 (56.12%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGS 585
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DR+G+ G DG +H G +D++ +  +P M V AP D A L   +  A  ++D P+  RFP+G+ +G  +P   +   +++         D V ++  G      +  A  L+ Q I VTV D R+  P+  +++ + A  H++++TVE+ G  GG GS
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQLMMDVALHKLPVTLVLDRSGVTGPDGASHNGMWDLSVLGIVPGMRVAAPRDGARLREELGEALDVNDAPTAIRFPKGD-VGEDIPAVRRHRGVDVLAEPADGLSDDVLLVAVGPFASMALTVAERLRKQGIGVTVVDPRWVLPV-PEVLTEFAAAHKLVVTVEDNGLHGGIGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYCSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium sp. (strain KMS) GN=dxs PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.599e-27
Identity = 69/196 (35.20%), Postives = 110/196 (56.12%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGS 585
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DR+G+ G DG +H G +D++ +  +P M V AP D A L   +  A  ++D P+  RFP+G+ +G  +P   +   +++         D V ++  G      +  A  L+ Q I VTV D R+  P+  +++ + A  H++++TVE+ G  GG GS
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQLMMDVALHKLPVTLVLDRSGVTGPDGASHNGMWDLSVLGIVPGMRVAAPRDGARLREELGEALDVNDAPTAIRFPKGD-VGEDIPAVRRHRGVDVLAEPADGLSDDVLLVAVGPFASMALTVAERLRKQGIGVTVVDPRWVLPV-PEVLTEFAAAHKLVVTVEDNGLHGGIGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYCSJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium sp. (strain JLS) GN=dxs PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.599e-27
Identity = 69/196 (35.20%), Postives = 110/196 (56.12%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGS 585
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DR+G+ G DG +H G +D++ +  +P M V AP D A L   +  A  ++D P+  RFP+G+ +G  +P   +   +++         D V ++  G      +  A  L+ Q I VTV D R+  P+  +++ + A  H++++TVE+ G  GG GS
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQLMMDVALHKLPVTLVLDRSGVTGPDGASHNGMWDLSVLGIVPGMRVAAPRDGARLREELGEALDVNDAPTAIRFPKGD-VGEDIPAVRRHRGVDVLAEPADGLSDDVLLVAVGPFASMALTVAERLRKQGIGVTVVDPRWVLPV-PEVLTEFAAAHKLVVTVEDNGLHGGIGS 568          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_MYCBP4.208e-2835.711-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCBO4.208e-2835.711-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS2_STRAW4.208e-2836.001-deoxy-D-xylulose-5-phosphate synthase 2 OS=Strep... [more]
DXS_NOCSJ5.495e-2835.181-deoxy-D-xylulose-5-phosphate synthase OS=Nocardi... [more]
DXS2_KITGR5.495e-2835.681-deoxy-D-xylulose-5-phosphate synthase 2 OS=Kitas... [more]
DXS_MYCLE9.373e-2834.901-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCLB9.373e-2834.901-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCSS1.599e-2735.201-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCSK1.599e-2735.201-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCSJ1.599e-2735.201-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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