CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_RHOSR (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodococcus sp. (strain RHA1) GN=dxs PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.727e-27
Identity = 75/199 (37.69%), Postives = 111/199 (55.78%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPR---GNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGS 585
            LA  G+ P  A+YS+FL R +DQ++ DV L KLPV   +DRAG+ G DG +H G +D++ +  +P M V AP D A L   +  A  +DD P+  RFP+   G+ + AV   +     L    GR     + V I+  G+     + AA  L+ Q IS TV D R+  P+   L++ LA ++ +++TVE+ G  GG GS
Sbjct:  377 LALGGLHPVVAVYSTFLNRAFDQLLMDVALLKLPVTLVLDRAGITGNDGASHNGMWDMSLLGIVPGMKVAAPRDTATLREELDEALAVDDGPTALRFPKGTVGDDVPAVSRLDGVVDILRAPSGR-----NDVLIVSVGAFAGLALAAAERLEQQGISATVVDPRWVLPVPESLVK-LAEDYTMVVTVEDSGLHGGVGS 569          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYCVP (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.562e-27
Identity = 69/196 (35.20%), Postives = 110/196 (56.12%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGS 585
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DR+G+ G DG +H G +D++ +  +P M V AP D A L   +  A  + D P+  RFP+G+ +G  +P   +   +++         + V ++  G      +  A+ L++Q I VTV D R+  P+  + I  LA  H++++T+E+ G  GG GS
Sbjct:  375 LAMGGMHPVVAIYSTFLNRAFDQMLMDVALHKLPVTVVLDRSGVTGPDGASHNGMWDLSILGIVPGMRVAAPRDGARLREELGEALDVSDGPTAIRFPKGD-VGEDIPAIERRGDVDVLAVPADGMSEDVLLVAVGPFAAMALAVADRLRNQGIGVTVVDPRWVLPVPEE-IATLATRHKLVVTLEDNGGHGGVGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CHLTR (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia trachomatis GN=dxs PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.562e-27
Identity = 72/203 (35.47%), Postives = 108/203 (53.20%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKG-------TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A  G    C+IYS+FL R  D V HDV +Q+LPV FA+DRAGL   DG +H G +D+ F+  +PNMV+  P + A ++  +  ++++   P   R+P        +P N K        +P+  G+  IL +GD + ++  G +    +     L    IS TV D  F KPLD  L++ L   H  +I +EE S+ GG GS
Sbjct:  380 IARSGTPVCCSIYSTFLHRAMDNVFHDVCMQELPVIFAIDRAGLAFHDGRSHHGIYDLGFLCSMPNMVICQPRN-ALVLERLFFSSLLWKSPCAIRYPN-------IPANEKASNSFFPFSPILPGEAEILCQGDDLLLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEHSIHGGLGS 574          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CHLTB (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=dxs PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.562e-27
Identity = 72/203 (35.47%), Postives = 108/203 (53.20%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKG-------TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A  G    C+IYS+FL R  D V HDV +Q+LPV FA+DRAGL   DG +H G +D+ F+  +PNMV+  P + A ++  +  ++++   P   R+P        +P N K        +P+  G+  IL +GD + ++  G +    +     L    IS TV D  F KPLD  L++ L   H  +I +EE S+ GG GS
Sbjct:  380 IARSGTPVCCSIYSTFLHRAMDNVFHDVCMQELPVIFAIDRAGLAFHDGRSHHGIYDLGFLCSMPNMVICQPRN-ALVLERLFFSSLLWKSPCAIRYPN-------IPANEKASNSSFPFSPILPGEAEILCQGDDLLLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEHSIHGGLGS 574          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CHLTA (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=dxs PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.562e-27
Identity = 72/203 (35.47%), Postives = 108/203 (53.20%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKG-------TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A  G    C+IYS+FL R  D V HDV +Q+LPV FA+DRAGL   DG +H G +D+ F+  +PNMV+  P + A ++  +  ++++   P   R+P        +P N K        +P+  G+  IL +GD + ++  G +    +     L    IS TV D  F KPLD  L++ L   H  +I +EE S+ GG GS
Sbjct:  380 IARSGTPVCCSIYSTFLHRAMDNVFHDVCMQELPVIFAIDRAGLAFHDGRSHHGIYDLGFLCSMPNMVICQPRN-ALVLERLFFSSLLWKSPCAIRYPN-------IPANEKASNSFFPFSPILPGEAEILCQGDDLLLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEHSIHGGLGS 574          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CHLT2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=dxs PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.562e-27
Identity = 72/203 (35.47%), Postives = 108/203 (53.20%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKG-------TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A  G    C+IYS+FL R  D V HDV +Q+LPV FA+DRAGL   DG +H G +D+ F+  +PNMV+  P + A ++  +  ++++   P   R+P        +P N K        +P+  G+  IL +GD + ++  G +    +     L    IS TV D  F KPLD  L++ L   H  +I +EE S+ GG GS
Sbjct:  380 IARSGTPVCCSIYSTFLHRAMDNVFHDVCMQELPVIFAIDRAGLAFHDGRSHHGIYDLGFLCSMPNMVICQPRN-ALVLERLFFSSLLWKSPCAIRYPN-------IPANEKASNSSFPFSPILPGEAEILCQGDDLLLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEHSIHGGLGS 574          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS1_KITGR (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Kitasatospora griseola GN=dxs1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.935e-27
Identity = 70/199 (35.18%), Postives = 112/199 (56.28%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME---GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGS 585
            LA+ G+ P  A+Y++FL R +DQV+ DV L +L V F +DRAG+ G DG +H G +D++ +  +P + + AP D A +   V  A  ++D P+  RFP+G  +G   P   +     IG   +L        V ++  G +   C+ AA +L +  I+ TV D  + KP+D  L+ +LA  H +++TVE+ G  GG G+
Sbjct:  377 LATGGLHPVVAVYATFLNRAFDQVLMDVALHRLGVTFVLDRAGVTGNDGASHNGMWDLSVLQVVPGLRIAAPRDAARVREHVRQAVAVEDAPTVVRFPKGE-LGPEAPAIER-----IGGVDVLARTGPAPDVLLVAVGPMAAACLDAAALLAADGITATVVDPCWVKPVDPALV-ELAGAHRMVVTVEDNGRTGGVGA 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CAMHC (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=dxs PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.036e-26
Identity = 73/204 (35.78%), Postives = 112/204 (54.90%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTP-LEIGKGRILMEGD--RVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILI----TVEEGSVGGFGSLY 591
            +A EG KP+  IYS+F+QR YDQV+HD+ +  L    AMDRAG+VG DG TH G FDI+F++ +PN+ + AP DE     M+   + + +     R+PRG+    +L    K  P +  GK  +L E    + A++GYG+ V +    +  L   D    + D  F KPLD + +  LA + +I      +V++G +G   S +
Sbjct:  361 MAKEGFKPYITIYSTFMQRAYDQVIHDLAIMNLSAVIAMDRAGIVGEDGETHEGCFDISFLNAIPNVSMCAPRDEQSFKDMI-EYSYVHEGLLAIRYPRGS---FILHEQFKDAPKISRGKSVLLRENKNAKTALIGYGNGVGRAYEVSIKL---DFETDLIDLVFAKPLDKEFLINLAKKDKIWYIFSDSVKKGGIGDILSAF 557          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_LEPBL (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=dxs PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.354e-26
Identity = 67/197 (34.01%), Postives = 102/197 (51.78%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSLY 591
            + +  + P+  IYS+FL R  DQ+V DV L  LPVRF +DRAG VG DG TH G FD+ ++  LPNM V  PS+  +++  +      D  P   RFP+ N +        K   L  G  R+L  G  +A+L  GS++ +   A  +L+S   SVT+ D  + +PL  + + +  +     + ++E  V    S Y
Sbjct:  382 MTNGSIIPYMCIYSTFLTRAIDQLVQDVSLMNLPVRFVIDRAGCVGPDGETHQGLFDLGYLLGLPNMDVFVPSNGQDMIDSLRWMETYDKAPIAIRFPKAN-VDLKTLDFYKEVDLRPGTFRVLKRGTDLALLSIGSMIDEAKKATEILESAGFSVTLIDLIWLRPLGVEALNEELSNVRRFVIIDESYVDAGASGY 577          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_LEPBJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=dxs PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.354e-26
Identity = 67/197 (34.01%), Postives = 102/197 (51.78%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSLY 591
            + +  + P+  IYS+FL R  DQ+V DV L  LPVRF +DRAG VG DG TH G FD+ ++  LPNM V  PS+  +++  +      D  P   RFP+ N +        K   L  G  R+L  G  +A+L  GS++ +   A  +L+S   SVT+ D  + +PL  + + +  +     + ++E  V    S Y
Sbjct:  382 MTNGSIIPYMCIYSTFLTRAIDQLVQDVSLMNLPVRFVIDRAGCVGPDGETHQGLFDLGYLLGLPNMDVFVPSNGQDMIDSLRWMETYDKAPIAIRFPKAN-VDLKTLDFYKEVDLRPGTFRVLKRGTDLALLSIGSMIDEAKKATEILESAGFSVTLIDLIWLRPLGVEALNEELSNVRRFVIIDESYVDAGASGY 577          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_RHOSR2.727e-2737.691-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoco... [more]
DXS_MYCVP3.562e-2735.201-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_CHLTR3.562e-2735.471-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_CHLTB3.562e-2735.471-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_CHLTA3.562e-2735.471-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_CHLT23.562e-2735.471-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS1_KITGR7.935e-2735.181-deoxy-D-xylulose-5-phosphate synthase 1 OS=Kitas... [more]
DXS_CAMHC1.036e-2635.781-deoxy-D-xylulose-5-phosphate synthase OS=Campylo... [more]
DXS_LEPBL1.354e-2634.011-deoxy-D-xylulose-5-phosphate synthase OS=Leptosp... [more]
DXS_LEPBJ1.354e-2634.011-deoxy-D-xylulose-5-phosphate synthase OS=Leptosp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
back to top