CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_FUSNN (1-deoxy-D-xylulose-5-phosphate synthase OS=Fusobacterium nucleatum subsp. nucleatum GN=dxs PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.015e-26
Identity = 64/196 (32.65%), Postives = 109/196 (55.61%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G KP+  IYS+F+QR   Q++HDV +Q LPVRF +DR+G+VG DG TH G +D++F   + N  V+ P+   EL   +  +   +  P   R PR     ++    N+  PLEIG+ +++ +G +   +  G++++  +   + L+++ I  T+  A   KPLD + +     E++ +  +EE  V   FG+
Sbjct:  353 LAKSGKKPYVCIYSTFIQRAISQLIHDVSIQNLPVRFIIDRSGIVGEDGKTHNGIYDLSFFLSIQNFTVLCPTTAKELGQALEISKNFNLGPLVIRIPR----DSIFDIENE-EPLEIGRWKVIKKGSKNLFIATGTMLKIILEIYDKLQNRGIYCTIISAASVKPLDENYLLNYIKEYDNIFVLEENYVKNSFGT 543          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS1_STRCO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Streptomyces coelicolor GN=dxs1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.015e-26
Identity = 69/198 (34.85%), Postives = 111/198 (56.06%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDR--VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            LA+ G+ P  A+Y++FL R +DQ++ DV L +  V F +DRAG+ G DG +H G +D++ +  +P + + AP D  +L   +  A  +DD P+  RFP+   +G  +P  ++     IG   +L   DR  V ++  G +   C+ AA +L+++ I  TV D R+ KP+D  L   LA  H ++  VE+ S   G GS
Sbjct:  377 LATGGLHPVVAVYATFLNRAFDQLLMDVALHRCGVTFVLDRAGVTGVDGASHNGMWDMSVLQVVPGLRIAAPRDADQLRTQLREAVAVDDAPTLLRFPK-ESVGPAVPAVDR-----IGGLDVLHTADRSEVLLVAVGVMAPVCLGAAELLEARGIGCTVVDPRWVKPVDPAL-APLAARHRLVAVVEDNSRAAGVGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_STRC1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Streptomyces sp. (strain CL190) GN=dxs PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.143e-26
Identity = 66/198 (33.33%), Postives = 112/198 (56.57%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDR--VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            LA+ G+ P  A+Y++FL R +DQ++ DV L +  V F +DRAG+ G DG +H G +D++ +  +P + + AP D   +   +  A  +DD P+  RFP+   +G  +P  ++     +G   +L   +R  V ++  G + Q C+  A +L+++ I  TV D R+ KP+D  ++  LA EH ++  VE+ S   G GS
Sbjct:  377 LATGGLHPVVAVYATFLNRAFDQLLMDVALHRCGVTFVLDRAGVTGVDGASHNGMWDMSVLQVVPGLRIAAPRDADHVRAQLREAVAVDDAPTLIRFPK-ESVGPRIPALDR-----VGGLDVLHRDERPEVLLVAVGVMAQVCLQTAELLRARGIGCTVVDPRWVKPVD-PVLPPLAAEHRLVAVVEDNSRAAGVGS 567          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS1_STRAW (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Streptomyces avermitilis GN=dxs1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.143e-26
Identity = 63/189 (33.33%), Postives = 107/189 (56.61%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS 567
            LA+ G+ P  A+Y++FL R +DQ++ DV L +  V F +DRAG+ G DG +H G +D++ +  +P + + AP D  +L   +  A  +DD P+  RFP+   +G  +P  +    +++       E  +V ++  G +   C+ AA +L+++ I  TV D R+ KP+D  L   LA EH ++  VE+ S
Sbjct:  377 LATGGLHPVVAVYATFLNRAFDQLLMDVALHRCGVTFVLDRAGVTGVDGASHNGMWDMSILQVVPGLRIAAPRDADQLRAQLREAVAVDDAPTLLRFPK-ESVGPAIPAVDHVGGMDV--LHRFPESPQVLLVAVGVMAPVCLQAAELLEARGIGCTVVDPRWVKPVDPSL-PGLAAEHRLVAVVEDNS 561          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_RENSM (1-deoxy-D-xylulose-5-phosphate synthase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=dxs PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.773e-26
Identity = 69/199 (34.67%), Postives = 112/199 (56.28%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGA---VLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGS 585
            +A  G+ P  A+Y++FL RG+DQ++ DV L K  V   +DRAG+ G DGP+H G +D++ +  +P + + AP D   L   +  A  I D P+  R+ +GN +GA    +   + G  +   +     E D V ++  G++ +  +  AN+L +Q IS TV D R+  P+   +I +LA +H I+I +E+G   GG GS
Sbjct:  385 MAFGGLHPVVAMYATFLNRGFDQLLMDVALHKAGVTVVLDRAGVTGPDGPSHHGMWDLSMLQIIPGLHLAAPRDATRLREELREAVAISDAPTVLRYSKGN-VGAEVEAIERLDDGVDILARRPAGSTEND-VLLVSVGAMSEMSLQVANLLGAQGISSTVVDPRWVLPVPQSII-ELAAQHRIVIVIEDGVRAGGVGS 580          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MYXXD (1-deoxy-D-xylulose-5-phosphate synthase OS=Myxococcus xanthus (strain DK 1622) GN=dxs PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.146e-25
Identity = 75/200 (37.50%), Postives = 106/200 (53.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKG-----TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LAS G +P C IYS+FLQR YDQ++HDV L  LPV FA+DRAGLVGADG TH G +D+  +  LP++ + +P    +L  M+ T A+     S  RFPRG      LPP  +G      PL   +  +  E  R+ ++  G +     +AA      +   +V DAR   PLD   + +      +++  E  + GG GS
Sbjct:  337 LASAGARPVCCIYSTFLQRAYDQIIHDVCLPGLPVVFAVDRAGLVGADGATHQGTYDVASLRPLPDLHLWSPMVGEDLAPMLDT-ALAAPHASVIRFPRG-----TLPPLPEGLGAGEAPLRGARWLLRAEQPRLTLVTLGPL----GIAALEAARGEPGWSVLDARCASPLDEAALLEAGRSGHVVVAEEGTTRGGLGS 526          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_LEPIN (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptospira interrogans GN=dxs PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.146e-25
Identity = 62/174 (35.63%), Postives = 97/174 (55.75%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQ 522
            + +  + P+  IYS+FL R  DQ+V DV L  LPVRF +DRAG VG DG TH G FD+ ++  LPNM V  PS+  +L+  +      D  P   RFP+ + +        K T L+ G  R+   G  VA++  GS++ +   A+  L+++ +SVT+ D  + +PL  + + +
Sbjct:  381 MTNGNIIPYMCIYSTFLTRAMDQLVQDVSLMNLPVRFVIDRAGCVGPDGETHQGLFDLGYLLGLPNMDVFVPSNGQDLIDALRWMEKYDKSPVAIRFPK-SSVDLKTLDFYKETELQPGTFRVFKRGTDVALISIGSMIDEAKKASERLENEGLSVTLIDLVWLRPLGAEALNE 553          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_LEPIC (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dxs PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.146e-25
Identity = 62/174 (35.63%), Postives = 97/174 (55.75%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQ 522
            + +  + P+  IYS+FL R  DQ+V DV L  LPVRF +DRAG VG DG TH G FD+ ++  LPNM V  PS+  +L+  +      D  P   RFP+ + +        K T L+ G  R+   G  VA++  GS++ +   A+  L+++ +SVT+ D  + +PL  + + +
Sbjct:  381 MTNGNIIPYMCIYSTFLTRAMDQLVQDVSLMNLPVRFVIDRAGCVGPDGETHQGLFDLGYLLGLPNMDVFVPSNGQDLIDALRWMEKYDKSPVAIRFPK-SSVDLKTLDFYKETELQPGTFRVFKRGTDVALISIGSMIDEAKKASERLENEGLSVTLIDLVWLRPLGAEALNE 553          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CHLAB (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydophila abortus GN=dxs PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.146e-25
Identity = 67/192 (34.90%), Postives = 97/192 (50.52%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGG 576
            +A       C+IYS+FL R  D V HDV LQ LPV F +DRAGL   DG +H G +D++F+  +PNM++  P     +   +  +++   RPS  R+P    +       +     + G G IL +G+ V I+G G +    +     L S  IS TV D  F KP D +L   L   H  +I +EE S+ G
Sbjct:  383 IAKANTPVICSIYSTFLHRAMDNVFHDVCLQNLPVIFGIDRAGLAYGDGCSHHGIYDLSFLRAMPNMIICQPRSSI-VFQQLLQSSLHWQRPSAIRYPNIPALQGDPIATDINLYRDPGLGEILSQGEDVLIVGLGHMCSAALSIKLQLLSHGISATVVDPIFIKPFDNNLFSILLMHHSKVIIIEEHSIRG 573          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_RHOE4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=dxs PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.954e-25
Identity = 68/196 (34.69%), Postives = 108/196 (55.10%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA  G+ P  AIYS+FL R +DQ++ DV L K PV   +DRAG+ G DG +H G +D++ +  +P + V AP D   L   +  A ++DD P+  RFP+G    A+         +++ K      GD V ++  G      +  A  L  Q ISV V D R+  P+   L++ +A+++ +++T+E+G + GG GS
Sbjct:  377 LALGGLHPVVAIYSTFLNRAFDQLLMDVALLKQPVTVVLDRAGVTGVDGASHNGVWDLSLLGIIPGIRVAAPRDADTLREELDEALLVDDGPTVVRFPKGAVPEAIPAVKRLDGMVDVLKASEGERGD-VLLVAVGPFASLALEIAERLDKQGISVAVVDPRWVLPVADSLVK-MADKYALVVTIEDGGLHGGIGS 570          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_FUSNN3.015e-2632.651-deoxy-D-xylulose-5-phosphate synthase OS=Fusobac... [more]
DXS1_STRCO3.015e-2634.851-deoxy-D-xylulose-5-phosphate synthase 1 OS=Strep... [more]
DXS_STRC15.143e-2633.331-deoxy-D-xylulose-5-phosphate synthase OS=Strepto... [more]
DXS1_STRAW5.143e-2633.331-deoxy-D-xylulose-5-phosphate synthase 1 OS=Strep... [more]
DXS_RENSM8.773e-2634.671-deoxy-D-xylulose-5-phosphate synthase OS=Renibac... [more]
DXS_MYXXD1.146e-2537.501-deoxy-D-xylulose-5-phosphate synthase OS=Myxococ... [more]
DXS_LEPIN1.146e-2535.631-deoxy-D-xylulose-5-phosphate synthase OS=Leptosp... [more]
DXS_LEPIC1.146e-2535.631-deoxy-D-xylulose-5-phosphate synthase OS=Leptosp... [more]
DXS_CHLAB1.146e-2534.901-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_RHOE41.954e-2534.691-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoco... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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