CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS1_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.296e-61
Identity = 117/195 (60.00%), Postives = 145/195 (74.36%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LA EG+KPF A+YSSFLQRGYDQVVHDV LQKLPVRFA+DRAG VGADG TH G FD+ F+ CLPN+VVM  +DEAEL  MV TAA  D  P   R+PRG G+G  +P + +  PL IGKGRI+ EG  VA+L  G+ +Q C+ A  +L ++ ++ TVADARF KP D +L+  LA  HE+LI VEEG++GGFG+
Sbjct:  383 LACEGLKPFVALYSSFLQRGYDQVVHDVVLQKLPVRFAIDRAGFVGADGATHGGVFDMAFLGCLPNLVVMCAADEAELARMVVTAAGHDSGPIALRYPRGEGVGVEIPEDPQ--PLAIGKGRIVREGKGVALLSIGTRLQSCLEACEILAARGLTPTVADARFLKPFDEELVADLAARHEVLIVVEEGAIGGFGA 575          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_RHOCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodobacter capsulatus GN=dxs PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 4.924e-61
Identity = 114/196 (58.16%), Postives = 147/196 (75.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSL 588
            +A+ G+KPF A+YSSF+QRGYDQ+VHDV LQ LPVR  +DRAGLVG DG TH GAFD++ ++ LPN  VMA +DEAEL HMV TAA  D  P   R+PRG G G  +P   +G  LEIGKGR++ EG  VAIL +G+ + Q + AA ML+++ +S TVADARFC+PLDTDLI +L   H  LIT+E+G++GGFG++
Sbjct:  382 MAAAGLKPFLALYSSFVQRGYDQLVHDVALQNLPVRLMIDRAGLVGQDGATHAGAFDVSMLANLPNFTVMAAADEAELCHMVVTAAAHDSGPIALRYPRGEGRGVEMP--ERGEVLEIGKGRVMTEGTEVAILSFGAHLAQALKAAEMLEAEGVSTTVADARFCRPLDTDLIDRLIEGHAALITLEQGAMGGFGAM 575          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SPHWW (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dxs PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.431e-61
Identity = 115/195 (58.97%), Postives = 147/195 (75.38%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LA++G +PFCAIYS+FLQR YDQVVHDV +Q LPVRFA+DRAGLVGADG TH G+FDIT+++ LPNMVVMA +DEAEL+HMV TAAV D  P   R+PRGNG+G  LP   +   L IGKGRI+ EG  VA+L  G+ + + + AA+ L +  +S TVAD RF KPLD  +I+ L   HE+ +T+EEG++GG G+
Sbjct:  381 LAAQGYRPFCAIYSTFLQRAYDQVVHDVAIQNLPVRFAIDRAGLVGADGSTHAGSFDITYLATLPNMVVMAAADEAELVHMVHTAAVHDSGPIALRYPRGNGVGVALPAAPE--RLAIGKGRIVREGKTVALLSLGTRLGEALRAADQLDALGLSTTVADLRFAKPLDEAMIQTLLTSHEVAVTIEEGAIGGLGA 573          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ERYLH (1-deoxy-D-xylulose-5-phosphate synthase OS=Erythrobacter litoralis (strain HTCC2594) GN=dxs PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.431e-61
Identity = 113/195 (57.95%), Postives = 149/195 (76.41%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LA++G++PF AIYS+FLQR YDQVVHDV +Q LPVRFA+DRAGLVGADG TH G+FD+T+++ LPN VVMA +DEAEL+HM  TAA  D  P  FR+PRG GIG  LP   +   LEIGKGRI+  G +VA+L  G+ +++   AA+ L+++ +S T+AD RF KPLDT+LI QL   HE+++T+EE S+GG G+
Sbjct:  381 LAAQGMRPFAAIYSTFLQRAYDQVVHDVAIQNLPVRFAIDRAGLVGADGSTHAGSFDVTYLATLPNFVVMAAADEAELVHMTYTAAEHDSGPIAFRYPRGGGIGIDLPETPE--KLEIGKGRIVKHGSKVALLSLGTRLEEAKRAADELEAKGLSTTIADMRFAKPLDTELIAQLMKNHEVVVTIEEASIGGLGA 573          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS2_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.431e-61
Identity = 117/195 (60.00%), Postives = 144/195 (73.85%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LA EG+KPF A+YSSFLQRGYDQVVHDV LQKLPVRFA+DRAG VGADG TH G FD+ F+ CLPN+VVM  +DEAEL  MV TAA  D  P   R+PRG G+G  +P + +  PL IGKGRI+ EG  VA+L  G+ +Q C+ A  +L ++ ++ TVADARF KP D +L+  LA  HE+LI VEEG++GGF S
Sbjct:  383 LACEGLKPFVALYSSFLQRGYDQVVHDVVLQKLPVRFAIDRAGFVGADGATHGGVFDMAFLGCLPNLVVMCAADEAELARMVVTAAGHDSGPIALRYPRGEGVGVEIPEDPQ--PLAIGKGRIVREGKGVALLSIGTRLQSCLEACEILAARGLTPTVADARFLKPFDEELVADLAARHEVLIVVEEGAIGGFCS 575          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SPHAL (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingopyxis alaskensis GN=dxs PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.192e-60
Identity = 115/195 (58.97%), Postives = 148/195 (75.90%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LA++G++PF AIYS+FLQR YDQVVHDV +Q LPVRFA+DRAGLVGADG TH G+FDIT+++ LPNMVVMA +DEAEL+HM  TAA  D  P  FR+PRGNG G  LP   +   LEIGKGR++ EG  VAIL  G+ + + + AA+ L+++ +S +V D RF KPLD +LIR+    HE+ +TVEEGS+GG G+
Sbjct:  381 LAAQGMRPFAAIYSTFLQRAYDQVVHDVAIQNLPVRFAIDRAGLVGADGSTHAGSFDITYLATLPNMVVMAAADEAELVHMTYTAAEHDAGPIAFRYPRGNGTGVALPAVPQ--KLEIGKGRVVREGKTVAILSLGTRLAEALKAADTLEARGLSTSVIDLRFAKPLDEELIRRTLAAHEVCVTVEEGSIGGLGA 573          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS2_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymomonas mobilis GN=dxs2 PE=3 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 3.902e-58
Identity = 111/195 (56.92%), Postives = 143/195 (73.33%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LA+ G KPFC +YS+FLQRGYDQ+VHDV +Q LPVRFA+DRAGLVGADG TH G+FD+ FM  LPNMVVMAPSDE EL +MV + A  D  P   R+PRGNG+G  L    +  P  IGKGR++  G +VAIL  G+ +++ + AA+ L +Q +S +VAD RF KPLD  L RQL   H+++IT+EEG++GGF +
Sbjct:  381 LAAAGYKPFCCLYSTFLQRGYDQLVHDVAIQNLPVRFAVDRAGLVGADGATHAGSFDLAFMVNLPNMVVMAPSDERELANMVHSMAHYDQGPISVRYPRGNGVGVSLEGEKEILP--IGKGRLIRRGKKVAILSLGTRLEESLKAADRLDAQGLSTSVADMRFAKPLDEALTRQLLKSHQVIITIEEGALGGFAT 573          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS1_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymomonas mobilis GN=dxs1 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.902e-58
Identity = 111/195 (56.92%), Postives = 143/195 (73.33%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LA+ G KPFC +YS+FLQRGYDQ+VHDV +Q LPVRFA+DRAGLVGADG TH G+FD+ FM  LPNMVVMAPSDE EL +MV + A  D  P   R+PRGNG+G  L    +  P  IGKGR++  G +VAIL  G+ +++ + AA+ L +Q +S +VAD RF KPLD  L RQL   H+++IT+EEG++GGF +
Sbjct:  381 LAAAGYKPFCCLYSTFLQRGYDQLVHDVAIQNLPVRFAVDRAGLVGADGATHAGSFDLAFMVNLPNMVVMAPSDERELANMVHSMAHYDQGPISVRYPRGNGVGVSLEGEKEILP--IGKGRLIRRGKKVAILSLGTRLEESLKAADRLDAQGLSTSVADMRFAKPLDEALTRQLLKSHQVIITIEEGALGGFAT 573          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CYAP8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=dxs PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.004e-54
Identity = 109/196 (55.61%), Postives = 133/196 (67.86%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            LA EG++P  AIYS+FLQR YDQV+HDV +Q LPV F MDRAG+VGADGPTH G +DI ++ C+PNM +MAP DEAEL  M+ T     D P   R+PRGNGIG  L       PL IGKG IL  GD + ILGYG++V   + AA  L+   I  TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS
Sbjct:  380 LACEGMRPVVAIYSTFLQRAYDQVLHDVCIQNLPVFFCMDRAGIVGADGPTHQGMYDIAYLRCIPNMTIMAPKDEAELQRMIVTGVNYTDGPIAMRYPRGNGIGVPLMEEG-WEPLPIGKGEILRNGDDLLILGYGTMVNTALQAAETLREHGIEATVVNARFVKPLDTELILPLAQRIGKVVTLEEGCLMGGFGS 574          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SYNJB (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. GN=dxs PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 4.464e-54
Identity = 106/196 (54.08%), Postives = 134/196 (68.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            +A EG++P  AIYS+FLQR YDQ++HDV +QKLPV F +DRAG+VGADGPTH G +DI ++ C+P MV+MAP DEAEL  MV T       P   R+PRG+G+G  L       PL IGK  +L  G  V IL YGS+V   + AA +LK   IS TV +ARF KPLDT+LI  LA +  +++TVEEG  +GGFGS
Sbjct:  385 MACEGMRPVVAIYSTFLQRAYDQIIHDVCIQKLPVFFCLDRAGVVGADGPTHQGMYDIAYLRCIPEMVLMAPKDEAELQRMVVTGIQYTQGPIAMRYPRGSGVGVPLAEEG-WEPLPIGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISATVVNARFAKPLDTELILPLAEQSRLVVTVEEGCLMGGFGS 579          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS1_RHORT1.296e-6160.001-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS_RHOCA4.924e-6158.161-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoba... [more]
DXS_SPHWW6.431e-6158.971-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS_ERYLH6.431e-6157.951-deoxy-D-xylulose-5-phosphate synthase OS=Erythro... [more]
DXS2_RHORT6.431e-6160.001-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS_SPHAL3.192e-6058.971-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS2_ZYMMO3.902e-5856.921-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymom... [more]
DXS1_ZYMMO3.902e-5856.921-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymom... [more]
DXS_CYAP82.004e-5455.611-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_SYNJB4.464e-5454.081-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
back to top