CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_THEEB (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=dxs PE=3 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 7.615e-54
Identity = 105/196 (53.57%), Postives = 136/196 (69.39%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            +A++G++P  AIYS+FLQR YDQ+VHDV +QKLPV F MDRAG+VGADGPTH G +DI ++ CLPNMV+MAP DEAEL  M+ T     D P   R+PRGNG G  L       PLEIGKG +L  G+ + ++ YGS+V   +  A +LK   +S  V +ARF KPLDT+LI  LA +   ++T+EEG  +GGFGS
Sbjct:  380 MATQGMRPVAAIYSTFLQRAYDQIVHDVCIQKLPVFFCMDRAGIVGADGPTHQGMYDIAYLRCLPNMVLMAPKDEAELQRMIVTGINYTDGPIALRYPRGNGYGVALMEEG-WEPLEIGKGELLRSGEDLLLVAYGSMVYPAMQVAEILKEHGMSAAVINARFAKPLDTELILPLAKQIGRVVTLEEGCLMGGFGS 574          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SYNJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dxs PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.216e-53
Identity = 105/196 (53.57%), Postives = 133/196 (67.86%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            +A EG++P  AIYS+FLQR YDQ++HDV +QKLPV F +DRAG+VGADGPTH G +DI ++ C+P MV+MAP DEAEL  MV T       P   R+PRG G+G  L       P+ IGK  +L  G  V IL YGS+V   + AA +LK   IS TV +ARF KPLDT+LI  LA +  +++TVEEG  +GGFGS
Sbjct:  385 MACEGMRPVVAIYSTFLQRAYDQIIHDVCIQKLPVFFCLDRAGVVGADGPTHQGMYDIAYLRCIPEMVLMAPKDEAELQRMVVTGIQYTKGPIAMRYPRGAGVGVPLAEEG-WEPIPIGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISTTVVNARFAKPLDTELILPLAQQSRLVVTVEEGCLMGGFGS 579          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHEWM (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=dxs PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.216e-53
Identity = 107/195 (54.87%), Postives = 140/195 (71.79%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG+KP  AIYS+FLQRGYDQ++HDV LQKLPV FA+DR G+VGADGPTH GAFD++FM  +PNMV+MAPSDE E   M+ T    +D P+  R+PRG+  GA  P   + T L IGKG I  +G +VAIL +G+     +LA+ +   + +  TVAD RF KPLD +LI++LAN H++L+TVEE ++ GG GS
Sbjct:  381 ACEGLKPVVAIYSTFLQRGYDQLIHDVALQKLPVLFAIDRGGIVGADGPTHQGAFDLSFMRTVPNMVIMAPSDENECRQMLYTGYCYNDGPTAVRYPRGSATGA--PQIEEMTALPIGKGLIKRQGQKVAILNFGT-----LLASVLTAGESLDATVADMRFVKPLDVELIKELANSHDVLVTVEENAIMGGAGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CYAP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7424) GN=dxs PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.216e-53
Identity = 106/196 (54.08%), Postives = 133/196 (67.86%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            LA EG++P  AIYS+FLQR YDQV+HDV +Q LPV F MDRAG+VGADGPTH G +DI ++ C+PN+V+MAP DEAEL  M+ T     D P   R+PRGNG+G  L        L IGKG IL  GD + +LGYG++V   +  A +L    I  TV +ARF KPLDTDLI  LA +   ++T+EEG  +GGFGS
Sbjct:  379 LACEGMRPVVAIYSTFLQRAYDQVIHDVCIQNLPVFFCMDRAGIVGADGPTHQGMYDIAYLRCIPNLVIMAPKDEAELQRMIVTGVNYTDGPIAMRYPRGNGLGVPLMEEG-WEALPIGKGEILRNGDDLLLLGYGTMVNTAMQVAEILGEHGIEATVVNARFVKPLDTDLIVPLAKQTGKVVTLEEGCLMGGFGS 573          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ANAVT (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxs PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.216e-53
Identity = 107/196 (54.59%), Postives = 134/196 (68.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA EG++P  AIYS+FLQR YDQ++HDV +Q LPV F +DRAG+VG+DGPTH G +DI ++ C+PN+V+MAP DEAE+  MV T       P   RFPRGNG G  L       PLEIGKG IL  GD V I+GYG++V   + AA +L    I  TV +ARF KPLDT+LI  LA +   ++T+EEG V GGFGS
Sbjct:  380 LACEGMRPVAAIYSTFLQRAYDQIIHDVCIQNLPVFFCLDRAGIVGSDGPTHQGMYDIAYLRCIPNIVMMAPKDEAEMQRMVVTGIEYTTGPIAMRFPRGNGYGVPLMEEG-WEPLEIGKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGS 574          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ANASP (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=dxs PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.216e-53
Identity = 107/196 (54.59%), Postives = 135/196 (68.88%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA+EG++P  AIYS+FLQR YDQ++HDV +Q LPV F +DRAG+VG+DGPTH G +DI ++ C+PN+V+MAP DEAE+  MV T       P   RFPRGNG G  L       PLEIGKG IL  GD V I+GYG++V   + AA +L    I  TV +ARF KPLDT+LI  LA +   ++T+EEG V GGFGS
Sbjct:  380 LATEGMRPVAAIYSTFLQRAYDQIIHDVCIQNLPVFFCLDRAGIVGSDGPTHQGMYDIAYLRCIPNIVMMAPKDEAEMQRMVVTGIEHTTGPIAMRFPRGNGYGVPLMEEG-WEPLEIGKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGS 574          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SYNY3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=dxs PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.894e-53
Identity = 106/196 (54.08%), Postives = 133/196 (67.86%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            +A EG++P  AIYS+FLQRGYDQ++HDV +QKLPV F +DRAG+VGADGPTH G +DI ++ C+PN+V+MAP DEAEL  M+ T           R+PRGNGIG  L       PLEIGK  IL  GD V +LGYGS+V   +  A +L    I  TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS
Sbjct:  380 MACEGIRPVVAIYSTFLQRGYDQIIHDVCIQKLPVFFCLDRAGIVGADGPTHQGMYDIAYLRCIPNLVLMAPKDEAELQQMLVTGVNYTGGAIAMRYPRGNGIGVPLMEEG-WEPLEIGKAEILRSGDDVLLLGYGSMVYPALQTAELLHEHGIEATVVNARFVKPLDTELILPLAERIGKVVTMEEGCLMGGFGS 574          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CYAP4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dxs PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 3.779e-53
Identity = 107/196 (54.59%), Postives = 134/196 (68.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            LA EG++P   IYS+FLQR YDQ+VHDV +Q LPV F MDRAG+VGADGPTH G +DI ++ CLPNMV+MAP DEAEL  M+ T     D P   R+PRGNG G  L       PL IGK  +L +GD + +L YGS+V   + AA +L+   I+ TV +ARF KPLDT+LI  LA +   ++TVEEG  +GGFGS
Sbjct:  378 LACEGMRPVVTIYSTFLQRAYDQIVHDVCIQSLPVLFCMDRAGIVGADGPTHQGMYDIAYLRCLPNMVLMAPKDEAELQQMLVTGINYMDGPIGLRYPRGNGYGVALMEEG-WEPLPIGKAEVLRQGDDLLMLAYGSMVYPTLQAAEILREHGIAATVVNARFAKPLDTELILPLAEKLGRVVTVEEGCLIGGFGS 572          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CYAA5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=dxs PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 6.446e-53
Identity = 105/196 (53.57%), Postives = 134/196 (68.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            LA EG++P  AIYS+FLQR YDQV+HDV +Q LPV F +DRAG+VGADGPTH G +DI ++ C+PN+ +MAP DEAEL  MV T     D P   R+PRG+G+G  L       P+ IGKG IL  GD V ++GYG++V Q +  A +LK   I  TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS
Sbjct:  380 LACEGMRPVVAIYSTFLQRAYDQVLHDVCIQNLPVFFCLDRAGIVGADGPTHQGLYDIAYLRCIPNLTIMAPKDEAELQRMVVTGINHTDGPIAMRYPRGSGVGVPLMEEG-WEPVSIGKGEILRNGDDVLLVGYGTMVHQSLQVAEILKEHGIEATVVNARFVKPLDTELIVPLAQRIGKVVTLEEGCLMGGFGS 574          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_VIBVY (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio vulnificus (strain YJ016) GN=dxs PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 8.419e-53
Identity = 106/192 (55.21%), Postives = 137/192 (71.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGG 576
            +A  G  P  AIYS+FLQRGYDQ++HDV +  LPV FA+DRAGLVGADG TH GAFD+++M C+PNMV+MAPSDE E   M+ T       PS  R+PRGNG+G   P  ++ T LEIGKGR++ +G++VAIL +G+ +   + AA  L     + TVAD RF KPLD  LIRQLANEH++LIT+EE ++ G
Sbjct:  380 MAIGGYNPIVAIYSTFLQRGYDQLIHDVAIMNLPVMFAIDRAGLVGADGQTHQGAFDLSYMRCIPNMVIMAPSDENECRQMLYTGHK-HQGPSAVRYPRGNGMGT--PIESEFTALEIGKGRLVRQGEKVAILSFGTFLANALEAAEAL-----NATVADMRFVKPLDEALIRQLANEHDVLITIEENAIAG 563          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_THEEB7.615e-5453.571-deoxy-D-xylulose-5-phosphate synthase OS=Thermos... [more]
DXS_SYNJA2.216e-5353.571-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SHEWM2.216e-5354.871-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_CYAP72.216e-5354.081-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_ANAVT2.216e-5354.591-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]
DXS_ANASP2.216e-5354.591-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]
DXS_SYNY32.894e-5354.081-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_CYAP43.779e-5354.591-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_CYAA56.446e-5353.571-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_VIBVY8.419e-5355.211-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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