CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_VIBVU (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio vulnificus GN=dxs PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.436e-52
Identity = 105/192 (54.69%), Postives = 137/192 (71.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGG 576
            +A  G  P  AIYS+FLQRGYDQ++HDV +  LPV FA+DRAGLVGADG TH GAFD+++M C+PNMV+MAPSDE E   M+ T       PS  R+PRGNG+G   P  ++ T LEIGKGR++ +G++VAIL +G+ +   + AA  L     + TVAD RF KPLD  L+RQLANEH++LIT+EE ++ G
Sbjct:  380 MAIGGYNPIVAIYSTFLQRGYDQLIHDVAIMNLPVMFAIDRAGLVGADGQTHQGAFDLSYMRCIPNMVIMAPSDENECRQMLYTGHK-HQGPSAVRYPRGNGMGT--PIESEFTALEIGKGRLVRQGEKVAILSFGTFLANALEAAEAL-----NATVADMRFVKPLDEALLRQLANEHDVLITIEENAIAG 563          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_TRIEI (1-deoxy-D-xylulose-5-phosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=dxs PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.450e-52
Identity = 106/196 (54.08%), Postives = 131/196 (66.84%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            LASEG++P   IYS+FLQR YDQ++HDV +QKLPV F +DRAG+VGADGPTH G +DI ++ C+PNMVVMAP DE EL  MV T     D     R+PRGNG G  L        + IGKG IL  GD V ILGYGS+V   +  A +L    ++ TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS
Sbjct:  380 LASEGMRPVVCIYSTFLQRAYDQIIHDVCIQKLPVFFCLDRAGIVGADGPTHQGMYDIAYLRCIPNMVVMAPKDEGELQRMVLTGIKHTDGAIAMRYPRGNGYGVPLMEEG-WEAITIGKGEILRNGDDVLILGYGSMVYSAMQTAEILSEHGVAATVVNARFVKPLDTELILPLAQRIGQVVTMEEGCLMGGFGS 574          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_DECAR (1-deoxy-D-xylulose-5-phosphate synthase OS=Dechloromonas aromatica (strain RCB) GN=dxs PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.450e-52
Identity = 108/196 (55.10%), Postives = 139/196 (70.92%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA EG+KP  AIYS+FLQRGYDQ+VHDV LQ LPV FA+DR GLVGADGPTH G FD++F++C+PNM VMAP+DEAE   M++TA  ID  PS  R+PRG+G G +  P  K   L +GKG I   G  +A+L +GS+V     AA +   +++  TVA+ RF KPLD DLI +LA  H +L+++EE +V GG GS
Sbjct:  376 LACEGLKPVVAIYSTFLQRGYDQLVHDVALQNLPVIFAVDRGGLVGADGPTHHGTFDLSFVTCIPNMTVMAPADEAECRKMLSTAMTIDG-PSMVRYPRGSGTGTI--PEAKLDTLPVGKGDIRRRGKDIALLAFGSLV-----AAAVAAGEELDATVANMRFIKPLDADLIVELAGNHSLLVSIEENAVIGGAGS 563          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_THERP (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.178e-52
Identity = 106/196 (54.08%), Postives = 135/196 (68.88%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA++G++P CAIYS+FLQR YDQV+HDV +QKLPV FAMDRAGLVG DG TH G FD+ ++ CLPNMV+MAP DE EL HM+ATA   ++ P   R+PRG+G+G  +P   +   L IG+  +L EG  VAI+  G+ V     AA++L  + I  TV +ARF KPLD  LI   A E   L+TVEE  + GGFGS
Sbjct:  370 LATQGLRPVCAIYSTFLQRAYDQVIHDVCIQKLPVVFAMDRAGLVGEDGRTHHGVFDVAYLRCLPNMVLMAPKDEDELRHMLATALAYEEGPIALRYPRGSGVG--VPMLGEPRVLPIGRAELLREGSDVAIVALGATVLPAERAADILAERGIRATVINARFVKPLDRSLILDAARECGCLVTVEEAQLAGGFGS 563          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CHRVO (1-deoxy-D-xylulose-5-phosphate synthase OS=Chromobacterium violaceum GN=dxs PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.457e-52
Identity = 108/196 (55.10%), Postives = 136/196 (69.39%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A +G+KP  AIYS+FLQRGYDQ++HDV LQ LPV FA+DRAGLVGADGPTH GAFD++++ C+PNM VMAPSDE E   ++ TA  + D P+  R+PRG G GA +       P  IGKG +   G +VAIL +GS+V   + AA  L       TVAD RF KPLD +LIR+LA  HE+++TVEE  V GG GS
Sbjct:  375 MACDGLKPVVAIYSTFLQRGYDQLIHDVALQNLPVMFALDRAGLVGADGPTHAGAFDLSYLRCIPNMTVMAPSDENECRQLLYTAFQL-DTPTAVRYPRGTGPGAEIQQQMAALP--IGKGVVRRRGKQVAILAFGSMVHPALAAAEAL-----DATVADMRFVKPLDAELIRKLAQTHELIVTVEENVVMGGAGS 562          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHEON (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella oneidensis GN=dxs PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.588e-51
Identity = 104/195 (53.33%), Postives = 134/195 (68.72%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG KP  AIYS+FLQRGYDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    D  PS  R+PRG+  GA        T L IGKG I   G R+A+L +G+      LAA +  ++ +  TV D RF KPLD DL++++A  H++L+TVEE ++ GG GS
Sbjct:  381 ACEGYKPVVAIYSTFLQRGYDQLIHDVALQRLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGSATGAT--QVEAMTALPIGKGVIKRLGKRIALLNFGT-----TLAAALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHDVLVTVEENAIMGGAGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHESR (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sp. (strain MR-7) GN=dxs PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.074e-51
Identity = 104/195 (53.33%), Postives = 134/195 (68.72%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG KP  AIYS+FLQRGYDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    D  PS  R+PRG+  GA        T L IGKG I   G R+A+L +G+      LAA +  ++ +  TV D RF KPLD DL++++A  H++L+TVEE ++ GG GS
Sbjct:  381 ACEGFKPVVAIYSTFLQRGYDQLIHDVALQRLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGSATGAT--QVEAMTALPIGKGVIKRLGKRIAMLNFGT-----TLAAALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHDVLVTVEENAIMGGAGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHESM (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sp. (strain MR-4) GN=dxs PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.074e-51
Identity = 104/195 (53.33%), Postives = 134/195 (68.72%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG KP  AIYS+FLQRGYDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    D  PS  R+PRG+  GA        T L IGKG I   G R+A+L +G+      LAA +  ++ +  TV D RF KPLD DL++++A  H++L+TVEE ++ GG GS
Sbjct:  381 ACEGFKPVVAIYSTFLQRGYDQLIHDVALQRLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGSATGAT--QVEAMTALPIGKGVIKRLGKRIAMLNFGT-----TLAAALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHDVLVTVEENAIMGGAGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ACAM1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=dxs PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.074e-51
Identity = 103/196 (52.55%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A EG++P  AIYS+FLQRGYDQ++HDV +Q LPV F +DRAG+VGADGPTH G +DI ++ CLPNMV+MAP DEAEL  M+ T     D P   R+PRG+G+G  L       PL IGK   L  GD V +L YG++V      A+ML    +  TV +ARF KPLDT+LI  LA +   ++T+EEG + GGFGS
Sbjct:  379 MACEGMRPVVAIYSTFLQRGYDQIIHDVCIQNLPVFFCLDRAGIVGADGPTHQGMYDIAYLRCLPNMVMMAPKDEAELQQMLVTGINYTDGPIAMRYPRGSGLGVGLMEEG-WEPLPIGKAETLRHGDDVLLLAYGTMVNLASQVADMLTEHGVRATVVNARFAKPLDTELIIPLAQKIGQVVTLEEGCLPGGFGS 573          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHEHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella halifaxensis (strain HAW-EB4) GN=dxs PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.708e-51
Identity = 102/195 (52.31%), Postives = 136/195 (69.74%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG KP  AIYS+FLQRGYDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM  +PNMV+MAPSDE E   M+ T    +D P+  R+PRG+  GA        T + IGKG +  +G ++AIL +G+ +  C++AA  L       TVAD RF KPLD +L+++LA  H++L+TVEE ++ GG GS
Sbjct:  381 ACEGYKPVVAIYSTFLQRGYDQLIHDVALQRLPVLFAIDRGGIVGADGPTHQGAFDLSFMRIVPNMVIMAPSDENECRQMLYTGYCYNDGPTAVRYPRGSATGA--KQVETMTAMPIGKGLLKRQGQKIAILNFGTTLASCLVAAEAL-----DATVADMRFVKPLDVELVKELAANHDVLVTVEENAIMGGAGS 568          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_VIBVU1.436e-5254.691-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_TRIEI2.450e-5254.081-deoxy-D-xylulose-5-phosphate synthase OS=Trichod... [more]
DXS_DECAR2.450e-5255.101-deoxy-D-xylulose-5-phosphate synthase OS=Dechlor... [more]
DXS_THERP4.178e-5254.081-deoxy-D-xylulose-5-phosphate synthase OS=Thermom... [more]
DXS_CHRVO5.457e-5255.101-deoxy-D-xylulose-5-phosphate synthase OS=Chromob... [more]
DXS_SHEON1.588e-5153.331-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHESR2.074e-5153.331-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHESM2.074e-5153.331-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_ACAM12.074e-5152.551-deoxy-D-xylulose-5-phosphate synthase OS=Acaryoc... [more]
DXS_SHEHH2.708e-5152.311-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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