CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_NOSP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dxs PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.708e-51
Identity = 104/196 (53.06%), Postives = 133/196 (67.86%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA++G++P  AIYS+FLQR YDQ++HDV +Q LPV F +DRAG+VG+DGPTH G +DI ++ C+PN+V+MAP DEAEL  MV T       P   R+PRGNG G  L       PLEIGK  IL  GD V I+ YG++V   + AA +L    I  TV +ARF KPLDT+LI  LA +   +IT+EEG + GGFGS
Sbjct:  380 LATQGMRPVAAIYSTFLQRAYDQIIHDVCIQNLPVFFCLDRAGIVGSDGPTHQGMYDIAYLRCIPNIVIMAPKDEAELQRMVVTGVNHTSGPIAMRYPRGNGHGVPLMEEG-WEPLEIGKSEILRTGDDVLIVAYGTMVYPGMQAAEILSEHGIEATVINARFVKPLDTELILPLAKKIGRVITLEEGCIMGGFGS 574          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SYNP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 4.620e-51
Identity = 103/196 (52.55%), Postives = 134/196 (68.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            LA EG++P  AIYS+FLQR YDQ++HDV +QKLPV F +DRAG+VGADGPTH G +DI ++  +PN+V+MAP DEAEL  M+ T     D     R+PRG+GIGA L  +    PL IGKG IL  GD + ++GYG++V   +  A +L    IS TV +ARF KPLD++LI  LA +   + T EEG  +GGFGS
Sbjct:  380 LACEGMRPVVAIYSTFLQRAYDQIIHDVCIQKLPVFFCLDRAGIVGADGPTHQGMYDIAYLRLIPNIVLMAPKDEAELQRMLVTGIEYTDGAIAMRYPRGSGIGAPLMEDG-WEPLPIGKGEILRNGDDILLIGYGAMVHSTLQVAEILSEHGISATVINARFVKPLDSELIAPLAKQIGKVATFEEGCLMGGFGS 574          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_LARHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=dxs PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 4.620e-51
Identity = 108/196 (55.10%), Postives = 137/196 (69.90%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A +G+KP  AIYS+FLQR YDQ++HDV LQ LPV FA+DRAGLVGADGPTH GAFD++++ C+PNMVVMAPSDE E   ++ T A + D P+  R+PRG G G    P    T L +G+G +  +G  +AIL +GS+V   + AA+ L       +VAD RF KPLDT LIRQLA  HE+L+TVEE  V GG GS
Sbjct:  376 MACDGLKPVVAIYSTFLQRAYDQLIHDVALQNLPVVFAIDRAGLVGADGPTHAGAFDLSYLRCIPNMVVMAPSDENECRQLLYT-AFLHDGPTAVRYPRGTGPGC--EPVAAMTALPLGQGTLRRQGKGIAILAFGSMVHPALAAADQL-----DASVADMRFVKPLDTALIRQLAASHELLVTVEENVVMGGTGS 563          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHEB9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella baltica (strain OS195) GN=dxs PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 6.034e-51
Identity = 103/195 (52.82%), Postives = 135/195 (69.23%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG KP  AIYS+FLQR YDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    D  PS  R+PRG+  GA+       T L IGKG I   G R+AIL +G+     +LA+ +  ++ +  TV D RF KPLD DL++++A  HE+L+TVEE ++ GG G+
Sbjct:  381 ACEGFKPVVAIYSTFLQRAYDQLIHDVALQQLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGSATGAM--QVEAMTALPIGKGVIKRVGKRIAILNFGT-----LLASALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHEVLVTVEENAIMGGAGA 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHESH (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sediminis (strain HAW-EB3) GN=dxs PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 7.880e-51
Identity = 103/195 (52.82%), Postives = 137/195 (70.26%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG+KP  AIYS+FLQRGYDQ++HDV LQKLPV FA+DR G+VGADGPTH GAFD++FM  +PNMV+MAPSDE E   M+ T     + P+  R+PRG+  G   P   +   L IGKG I  +G +VAIL +G+++   + AA     + I  TVAD RF KPLD +L+++LA+ H++L+TVEE ++ GG GS
Sbjct:  381 ACEGLKPVVAIYSTFLQRGYDQLIHDVALQKLPVLFAIDRGGIVGADGPTHQGAFDLSFMRTVPNMVIMAPSDENECRQMLYTGYCYREGPTAVRYPRGSATGE--PQVEEMQALPIGKGLIKRQGQKVAILNFGTLLADVLTAA-----ESIDATVADMRFVKPLDVELVKELASSHDLLVTVEENAIMGGAGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHEPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=dxs PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 7.880e-51
Identity = 102/195 (52.31%), Postives = 138/195 (70.77%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG KP  AIYS+FLQRGYDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM  +PNMV+MAPSDE E   M+ T    +D P+  R+PRG+  GA        T + IGKG I  +G ++AIL +G+     +LA+++  ++ +  TVAD RF KPLD +L++QLA  H++L+TVEE ++ GG GS
Sbjct:  381 ACEGYKPVVAIYSTFLQRGYDQMIHDVALQRLPVLFAIDRGGIVGADGPTHQGAFDLSFMRIVPNMVIMAPSDENECRQMLYTGYCYNDGPTAVRYPRGSATGA--KQVETMTAMPIGKGLIKRQGKKIAILNFGT-----LLASSLTAAEALDATVADMRFVKPLDVELVKQLAESHDMLVTVEENAIMGGAGS 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHEB5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dxs PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 7.880e-51
Identity = 104/195 (53.33%), Postives = 133/195 (68.21%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG KP  AIYS+FLQR YDQ++HDV LQKLPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    D  PS  R+PRG   GA        T L IGKG I   G R+AIL +G+     +LA+ +  ++ +  TV D RF KPLD DL++++A  HE+L+TVEE ++ GG G+
Sbjct:  381 ACEGFKPVVAIYSTFLQRAYDQLIHDVALQKLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGCATGAT--QVEAMTALPIGKGVIKRVGKRIAILNFGT-----LLASALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHEVLVTVEENAIMGGAGA 568          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_MICAN (1-deoxy-D-xylulose-5-phosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=dxs PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.029e-50
Identity = 101/196 (51.53%), Postives = 129/196 (65.82%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            LA EG++P   IYS+FLQR +DQ++HD+ +Q LPV F MDRAG+VGADGPTH G +DI ++ C+PNM +MAP DEAEL  MV T       P   R+PRGNG+G  L        L IGKG IL  GD + +LGYG++V   +  A +L    I  TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS
Sbjct:  380 LACEGMRPVVTIYSTFLQRAFDQIIHDICIQNLPVFFCMDRAGIVGADGPTHQGMYDIAYLRCIPNMTIMAPKDEAELQRMVVTGINHTSGPIAMRYPRGNGLGVPLMEEG-WEALPIGKGEILRSGDDILLLGYGTMVNTSLQVAEILSEHGIEATVVNARFVKPLDTELIFPLAQRLGKVVTLEEGCLMGGFGS 574          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_VIBPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio parahaemolyticus GN=dxs PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.344e-50
Identity = 101/192 (52.60%), Postives = 138/192 (71.88%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGG 576
            +A  G  P  AIYS+FLQRGYDQ++HD+ +  LPV FA+DRAGLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T       PS  R+PRG+G+G  +    + T LEIGKGR++ +G++VAIL +G+ +   + AA     ++++ TVAD RF KPLD  LIRQLA+EH++L+T+EE ++ G
Sbjct:  380 MAIAGDHPIVAIYSTFLQRGYDQLIHDIAIMDLPVMFAIDRAGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGHK-HTGPSAVRYPRGSGMGTEI--EKEFTALEIGKGRVVRKGEKVAILSFGTFLPNALEAA-----KNLNATVADMRFVKPLDEALIRQLADEHDVLVTLEENAIAG 563          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SHESA (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sp. (strain ANA-3) GN=dxs PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.344e-50
Identity = 103/195 (52.82%), Postives = 133/195 (68.21%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            A EG KP  AIYS+FLQRGYDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    D  PS  R+PRG+  GA        T L IGKG I   G  +A+L +G+      LAA +  ++ +  TV D RF KPLD DL++++A  H++L+TVEE ++ GG GS
Sbjct:  381 ACEGFKPVVAIYSTFLQRGYDQLIHDVALQRLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGSATGAT--QVEAMTALPIGKGVIKRLGKGIAMLNFGT-----TLAAALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHDVLVTVEENAIMGGAGS 568          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_NOSP72.708e-5153.061-deoxy-D-xylulose-5-phosphate synthase OS=Nostoc ... [more]
DXS_SYNP24.620e-5152.551-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_LARHH4.620e-5155.101-deoxy-D-xylulose-5-phosphate synthase OS=Laribac... [more]
DXS_SHEB96.034e-5152.821-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHESH7.880e-5152.821-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEPA7.880e-5152.311-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEB57.880e-5153.331-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_MICAN1.029e-5051.531-deoxy-D-xylulose-5-phosphate synthase OS=Microcy... [more]
DXS_VIBPA1.344e-5052.601-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_SHESA1.344e-5052.821-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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