CB322159 | Citrus Genome Database

Overview


Name	CB322159
Unique Name	CB322159
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	509

Libraries


Library Name	Type
Mature leaf blade cDNA subtraction library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB322159 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.857e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  121 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 348
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 106.301 bits (264), Expect = 8.341e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1

Query:  349 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53

HSP 3 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 120
            PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CB322159 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.857e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  121 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 348
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 106.301 bits (264), Expect = 8.341e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1

Query:  349 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53

HSP 3 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 120
            PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CB322159 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.857e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  121 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 348
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 106.301 bits (264), Expect = 8.341e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1

Query:  349 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53

HSP 3 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 120
            PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CB322159 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.857e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  121 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 348
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 106.301 bits (264), Expect = 8.341e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1

Query:  349 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53

HSP 3 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 120
            PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CB322159 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.857e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  121 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 348
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 106.301 bits (264), Expect = 8.341e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1

Query:  349 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53

HSP 3 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 120
            PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CB322159 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.857e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  121 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 348
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 106.301 bits (264), Expect = 8.341e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1

Query:  349 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53

HSP 3 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 120
            PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CB322159 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.857e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  121 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 348
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 106.301 bits (264), Expect = 8.341e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1

Query:  349 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53

HSP 3 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 120
            PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CB322159 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.857e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  121 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 348
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 106.301 bits (264), Expect = 8.341e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1

Query:  349 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53

HSP 3 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 120
            PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CB322159 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.857e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  121 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 348
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 106.301 bits (264), Expect = 8.341e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1

Query:  349 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53

HSP 3 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 120
            PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CB322159 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.857e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  121 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 348
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 106.301 bits (264), Expect = 8.341e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1

Query:  349 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53

HSP 3 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 120
            PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CB322159 vs. ExPASy Swiss-Prot

BLAST of CB322159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95


Match Name	E-value	Identity	Description
UBIQ_LUPAL	3.857e-36	100.00	Ubiquitin OS=Lupinus albus PE=3 SV=1	[more]
UBIQ_LINUS	3.857e-36	100.00	Ubiquitin OS=Linum usitatissimum PE=3 SV=1	[more]
UBIQ_HORVU	3.857e-36	100.00	Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1	[more]
UBIQ_HELAN	3.857e-36	100.00	Ubiquitin OS=Helianthus annuus PE=3 SV=1	[more]
UBIQ_DESAN	3.857e-36	100.00	Ubiquitin OS=Deschampsia antarctica PE=2 SV=1	[more]
UBIQ_DAUCA	3.857e-36	100.00	Ubiquitin OS=Daucus carota PE=3 SV=1	[more]
UBIQ_BRARA	3.857e-36	100.00	Ubiquitin OS=Brassica rapa PE=3 SV=1	[more]
UBIQ_AVESA	3.857e-36	100.00	Ubiquitin OS=Avena sativa PE=1 SV=1	[more]
UBIQ_AVEFA	3.857e-36	100.00	Ubiquitin OS=Avena fatua PE=3 SV=1	[more]
UBIQ_ASPOF	3.857e-36	100.00	Ubiquitin OS=Asparagus officinalis PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	EST0276 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB196 similar to ubiquitin (acc# PS0428), mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB322159 ID=CB322159; Name=CB322159; organism=Citrus sinensis; type=EST; length=509bp
CCACCGGACCAGCAGAGGCTGATCTTCGCAGGAAAGCAACTCGAGGACGG
CCGCACCTTGGCCGATTACAATATCCAGAAGGAATCAACTCTTCACCTCG
TGCTTCGTCTCCGTGGGGGCATGCAGATATTCGTCAAAACCCTAACGGGA
AAGACGATTACCCTCGAAGTCGAGAGCTCCGACACGATCGACAACGTCAA
GGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAGCAGCGTTTGA
TCTTCGCTGGCAAGCAGCTGGAGGATGGAAGGACGCTCGCGGATTACAAC
ATTCAGAAGGAATCAACTCTTCATCTGGTTTTGCGTCTGAGGGGTGGCAT
GCAGATTTTTGTTAAGACATTGACCGGGAAGACGATTACCCTGGAGGTAG
AGAGTTCTGATACCATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAA
GGGATCCCACCTGATCAGCAGAGGCTCATCTTCGCTGGGAAGCAGCTTGA
GGACGGGCG