CB322179

Overview
NameCB322179
Unique NameCB322179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SALTY (Diaminopimelate epimerase OS=Salmonella typhimurium GN=dapF PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 34/108 (31.48%), Postives = 52/108 (48.15%), Query Frame = -3 
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            VD   +  +GP  E H  FP R N  F++++    +++RV+ER                   + +G       V+LPGG LDI WK   + +YMTGPA  ++ G + L
Sbjct:  167 VDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274
[Close]
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SALTI (Diaminopimelate epimerase OS=Salmonella typhi GN=dapF PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 34/108 (31.48%), Postives = 52/108 (48.15%), Query Frame = -3 
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            VD   +  +GP  E H  FP R N  F++++    +++RV+ER                   + +G       V+LPGG LDI WK   + +YMTGPA  ++ G + L
Sbjct:  167 VDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274
[Close]
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SALSV (Diaminopimelate epimerase OS=Salmonella schwarzengrund (strain CVM19633) GN=dapF PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 34/108 (31.48%), Postives = 52/108 (48.15%), Query Frame = -3 
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            VD   +  +GP  E H  FP R N  F++++    +++RV+ER                   + +G       V+LPGG LDI WK   + +YMTGPA  ++ G + L
Sbjct:  167 VDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274
[Close]
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SALPK (Diaminopimelate epimerase OS=Salmonella paratyphi A (strain AKU_12601) GN=dapF PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 34/108 (31.48%), Postives = 52/108 (48.15%), Query Frame = -3 
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            VD   +  +GP  E H  FP R N  F++++    +++RV+ER                   + +G       V+LPGG LDI WK   + +YMTGPA  ++ G + L
Sbjct:  167 VDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274
[Close]
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SALPB (Diaminopimelate epimerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dapF PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 34/108 (31.48%), Postives = 52/108 (48.15%), Query Frame = -3 
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            VD   +  +GP  E H  FP R N  F++++    +++RV+ER                   + +G       V+LPGG LDI WK   + +YMTGPA  ++ G + L
Sbjct:  167 VDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274
[Close]
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SALPA (Diaminopimelate epimerase OS=Salmonella paratyphi A GN=dapF PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 34/108 (31.48%), Postives = 52/108 (48.15%), Query Frame = -3 
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            VD   +  +GP  E H  FP R N  F++++    +++RV+ER                   + +G       V+LPGG LDI WK   + +YMTGPA  ++ G + L
Sbjct:  167 VDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274
[Close]
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SALNS (Diaminopimelate epimerase OS=Salmonella newport (strain SL254) GN=dapF PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 34/108 (31.48%), Postives = 52/108 (48.15%), Query Frame = -3 
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            VD   +  +GP  E H  FP R N  F++++    +++RV+ER                   + +G       V+LPGG LDI WK   + +YMTGPA  ++ G + L
Sbjct:  167 VDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274
[Close]
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SALHS (Diaminopimelate epimerase OS=Salmonella heidelberg (strain SL476) GN=dapF PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 34/108 (31.48%), Postives = 52/108 (48.15%), Query Frame = -3 
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            VD   +  +GP  E H  FP R N  F++++    +++RV+ER                   + +G       V+LPGG LDI WK   + +YMTGPA  ++ G + L
Sbjct:  167 VDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274
[Close]
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SALDC (Diaminopimelate epimerase OS=Salmonella dublin (strain CT_02021853) GN=dapF PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 34/108 (31.48%), Postives = 52/108 (48.15%), Query Frame = -3 
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            VD   +  +GP  E H  FP R N  F++++    +++RV+ER                   + +G       V+LPGG LDI WK   + +YMTGPA  ++ G + L
Sbjct:  167 VDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274
[Close]
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SALA4 (Diaminopimelate epimerase OS=Salmonella agona (strain SL483) GN=dapF PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 34/108 (31.48%), Postives = 52/108 (48.15%), Query Frame = -3 
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            VD   +  +GP  E H  FP R N  F++++    +++RV+ER                   + +G       V+LPGG LDI WK   + +YMTGPA  ++ G + L
Sbjct:  167 VDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274
The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
DAPF_SALTY9.951e-1131.48Diaminopimelate epimerase OS=Salmonella typhimuriu... [more]
DAPF_SALTI9.951e-1131.48Diaminopimelate epimerase OS=Salmonella typhi GN=d... [more]
DAPF_SALSV9.951e-1131.48Diaminopimelate epimerase OS=Salmonella schwarzeng... [more]
DAPF_SALPK9.951e-1131.48Diaminopimelate epimerase OS=Salmonella paratyphi ... [more]
DAPF_SALPB9.951e-1131.48Diaminopimelate epimerase OS=Salmonella paratyphi ... [more]
DAPF_SALPA9.951e-1131.48Diaminopimelate epimerase OS=Salmonella paratyphi ... [more]
DAPF_SALNS9.951e-1131.48Diaminopimelate epimerase OS=Salmonella newport (s... [more]
DAPF_SALHS9.951e-1131.48Diaminopimelate epimerase OS=Salmonella heidelberg... [more]
DAPF_SALDC9.951e-1131.48Diaminopimelate epimerase OS=Salmonella dublin (st... [more]
DAPF_SALA49.951e-1131.48Diaminopimelate epimerase OS=Salmonella agona (str... [more]

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Properties
Property NameValue
Genbank descriptionEST0300 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB226 similar to diaminopimelate epimerase (acc# NP_190926), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bp
ACATCTTTCTAGCTAACAATGCGCGTCTGCAAAATTCAGGTAATCTGAGA
CAAGGAAGTTCTCGACAATAAATTAATTTAGCAGGACCGATCCATAAAAC
ACTACTTCTGCCGGGCCAGTCATATATACATGGTTGTCTTCCTCCTTCCA
CTCAATATCCAATGGCCCTCCAGGTAGATCAACAGTGCATCTTCTCTCAG
CATGACCCTCAAGAACTGCTGCGACCACAACTGCACAAGCACCAGTCCCA
CATGCCAGGGTTGCTCCAGCCCCACGTTCCCAAACACGCATCTTCAGTTG
TGAAGGAGAAATAATCTCCACAAATTCTGTATTAGTTCGTGCTGGGAACA
CAGAATGATGCTCAAATTTAGGACCAATTTCAGCCAAGTTTAGTTTATCA
ACCTTCAAATTCTGCCCTTCTTTTG
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