CB322179

Overview
NameCB322179
Unique NameCB322179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_NITEC (Diaminopimelate epimerase OS=Nitrosomonas eutropha (strain C91) GN=dapF PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 35/106 (33.02%), Postives = 52/106 (49.06%), Query Frame = -3
Query:   85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402
            +D   +   GPK E H +FP R N  F++II  + +++RV+ER                   +L G  +    V + GG L I W  +D  V+MTGPA  VF G++
Sbjct:  171 IDLAPVTTEGPKIEAHPLFPERVNAGFMQIIDRAHIRLRVFERGTGETLACGTGACAAVVCGILRGLLDTTVQVAMHGGNLQIRWDGKDKPVWMTGPAITVFEGTI 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_HAES2 (Diaminopimelate epimerase OS=Haemophilus somnus (strain 2336) GN=dapF PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 35/108 (32.41%), Postives = 55/108 (50.93%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            +   N+  +GP  E H  FP R N  F++II+ + +K+RV+ER                   +++G       VDLPGG L IEW+ + + +YMTG A  ++ G + L
Sbjct:  167 IQHANIEILGPLLESHERFPERVNAGFMQIINRNHIKLRVYERGAGETQACGSGACAAVAVGIMQGVLGSCVQVDLPGGRLMIEWQGKGHPLYMTGEATHIYDGVIRL 274          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_HAEIG (Diaminopimelate epimerase OS=Haemophilus influenzae (strain PittGG) GN=dapF PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 34/108 (31.48%), Postives = 52/108 (48.15%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            +   N+ ++GP  E H  FP R N  F++II+   +K+RV+ER                   +++G       VDL GG L IEW    + +YMTG A  ++ G + L
Sbjct:  167 IQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLLNNNVQVDLSGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_ECO27 (Diaminopimelate epimerase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=dapF PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 35/108 (32.41%), Postives = 52/108 (48.15%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            VD   +  +GP  E H  FP R N  F++++    +++RV+ER                   + +G       V+LPGG LDI WK   + +YMTGPA  V+ G + L
Sbjct:  167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVFERGAGETQACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274          
The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
DAPF_NITEC9.951e-1133.02Diaminopimelate epimerase OS=Nitrosomonas eutropha... [more]
DAPF_HAES29.951e-1132.41Diaminopimelate epimerase OS=Haemophilus somnus (s... [more]
DAPF_HAEIG9.951e-1131.48Diaminopimelate epimerase OS=Haemophilus influenza... [more]
DAPF_ECO279.951e-1132.41Diaminopimelate epimerase OS=Escherichia coli O127... [more]

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Properties
Property NameValue
Genbank descriptionEST0300 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB226 similar to diaminopimelate epimerase (acc# NP_190926), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bp
ACATCTTTCTAGCTAACAATGCGCGTCTGCAAAATTCAGGTAATCTGAGA
CAAGGAAGTTCTCGACAATAAATTAATTTAGCAGGACCGATCCATAAAAC
ACTACTTCTGCCGGGCCAGTCATATATACATGGTTGTCTTCCTCCTTCCA
CTCAATATCCAATGGCCCTCCAGGTAGATCAACAGTGCATCTTCTCTCAG
CATGACCCTCAAGAACTGCTGCGACCACAACTGCACAAGCACCAGTCCCA
CATGCCAGGGTTGCTCCAGCCCCACGTTCCCAAACACGCATCTTCAGTTG
TGAAGGAGAAATAATCTCCACAAATTCTGTATTAGTTCGTGCTGGGAACA
CAGAATGATGCTCAAATTTAGGACCAATTTCAGCCAAGTTTAGTTTATCA
ACCTTCAAATTCTGCCCTTCTTTTG
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