CB322179

Overview
NameCB322179
Unique NameCB322179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_EUBR3 (Diaminopimelate epimerase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=dapF PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.171e-17
Identity = 45/101 (44.55%), Postives = 57/101 (56.44%), Query Frame = -3
Query:   85 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 387
            L + GP FE+H +FP RTNTEFVEI+S ++ KMRVWER                   +L    + +  V L GG L IE+  E NHV+MTGPA  VF G +
Sbjct:  182 LEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGTCATVMACILNKKTDNKVLVHLRGGDLTIEYIPETNHVFMTGPATEVFSGEI 282          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_DESRM (Diaminopimelate epimerase OS=Desulfotomaculum reducens (strain MI-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.171e-17
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            ++ ++L ++GP+ E H  FP +TN EFV+++ P++++M VWER                   VL G  ER  TV LPGG L IEW  E+  +YMTGPA  VF G
Sbjct:  172 LEDISLTQVGPQIEVHPAFPKKTNVEFVQVLGPNEVRMVVWERGAGPTMACGTGACAVAVAGVLNGFTERMVTVHLPGGSLMIEW-AENGRIYMTGPATEVFSG 274          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_DESAP (Diaminopimelate epimerase OS=Desulforudis audaxviator (strain MP104C) GN=dapF PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.171e-17
Identity = 46/104 (44.23%), Postives = 56/104 (53.85%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            +D     + GP  E H  FPARTN EFVE++SP ++ +RVWER                   VL G   RR  V LPGG L IEW ++   VYM+GPAE VF G
Sbjct:  170 LDDAGFRKYGPLLEVHPAFPARTNVEFVEVLSPGEVAVRVWERGVGPTPACGTGACAVAVAGVLTGRTARRVHVRLPGGVLLIEWPDDAGPVYMSGPAEEVFDG 273          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PELTS (Diaminopimelate epimerase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=dapF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.293e-17
Identity = 45/104 (43.27%), Postives = 56/104 (53.85%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            +D +     GP  E H  FP RTN EF+++++P ++KMRVWER                   VL G+  RR TV L  G L IEW  E  HVYM+GPAE VF G
Sbjct:  172 LDAVPFQTAGPLIETHPAFPRRTNVEFIQVLTPEEIKMRVWERGAGETMACGTGACAAVVAGVLNGYTGRRVTVHLKAGDLFIEW-PEGKHVYMSGPAEEVFSG 274          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACFR (Diaminopimelate epimerase OS=Bacteroides fragilis GN=dapF PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.070e-16
Identity = 43/105 (40.95%), Postives = 55/105 (52.38%), Query Frame = -3
Query:   79 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 393
            +NL+E+GPK E H +FP RTN EF +I   + ++MRVWER                    L G   R   V + GG L IEW E   H+ MTGPA  VF G++ L
Sbjct:  163 VNLSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVAAHLTGRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIEL 267          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_ALHEH (Diaminopimelate epimerase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.612e-16
Identity = 41/109 (37.61%), Postives = 57/109 (52.29%), Query Frame = -3
Query:   76 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 402
            VD   +  +GP  E HS FP R N  F+++++P+ +++RV+ER                    L G  E    VDLPGG L I W  +  HV+MTGPAE VF G + L+
Sbjct:  171 VDSAPVETLGPAIESHSRFPRRVNVGFMQVLTPTHIRLRVYERGAGETLACGTGACAAVVSGRLRGWLEEAVDVDLPGGRLVIHWAGDGEHVWMTGPAETVFEGEIRLD 279          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PARD8 (Diaminopimelate epimerase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.027e-15
Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = -3
Query:   85 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 405
            ++D++ LA +GP  E   +FP RTN EFV+++ P +++MRVWER                   V+ G  +R+  V + GGPL IEW E    V+MTG A  VF G +
Sbjct:  161 EMDQVGLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVVRGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFI 267          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_CARHZ (Diaminopimelate epimerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.027e-15
Identity = 44/106 (41.51%), Postives = 58/106 (54.72%), Query Frame = -3
Query:   79 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 396
            K+ L + GP  E H +FP +TN EFVEI+SP+++K+ VWER                    + GH +    V LPGG L I W   ++ VYMTGPAE+VF G   L
Sbjct:  170 KIELEKYGPLIETHPLFPRKTNVEFVEILSPAKVKVFVWERGAGATLACGTGASAVVVAGRILGHLQEDVEVVLPGGSLFINWVFGES-VYMTGPAEIVFKGEYFL 274          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_MAGSM (Diaminopimelate epimerase OS=Magnetococcus sp. (strain MC-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.752e-15
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = -3
Query:   82 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 387
            LA++GP  EHH++FP R N E V+++S S+++MRVWER                   + +G  ER CTV L GG L I W E D  V M+GPA  VF G ++
Sbjct:  172 LAKVGPLVEHHALFPNRINFEVVQVLSRSRIRMRVWERGAGITPACGTGACAAAVACMRQGWVERDCTVVLDGGELQIVWLESD-RVMMSGPATEVFRGELV 272          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_GRABC (Diaminopimelate epimerase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.752e-15
Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = -3
Query:   79 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 396
            +L++   GP  E H +FP R N    +++S S +++RVWER                   V  G AER   V+L GG L I W+E+D HV MTGPA  VF+G + L
Sbjct:  165 ELDIPVTGPLLERHPLFPERANIGHAQMLSRSHIRLRVWERGAGLTLACGTGACATLVNAVRRGLAEREAVVELDGGQLLIHWREQDGHVLMTGPAATVFHGRIAL 270          
The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
DAPF_EUBR34.171e-1744.55Diaminopimelate epimerase OS=Eubacterium rectale (... [more]
DAPF_DESRM4.171e-1741.35Diaminopimelate epimerase OS=Desulfotomaculum redu... [more]
DAPF_DESAP4.171e-1744.23Diaminopimelate epimerase OS=Desulforudis audaxvia... [more]
DAPF_PELTS9.293e-1743.27Diaminopimelate epimerase OS=Pelotomaculum thermop... [more]
DAPF_BACFR2.070e-1640.95Diaminopimelate epimerase OS=Bacteroides fragilis ... [more]
DAPF_ALHEH4.612e-1637.61Diaminopimelate epimerase OS=Alkalilimnicola ehrli... [more]
DAPF_PARD81.027e-1538.32Diaminopimelate epimerase OS=Parabacteroides dista... [more]
DAPF_CARHZ1.027e-1541.51Diaminopimelate epimerase OS=Carboxydothermus hydr... [more]
DAPF_MAGSM1.752e-1542.16Diaminopimelate epimerase OS=Magnetococcus sp. (st... [more]
DAPF_GRABC1.752e-1538.68Diaminopimelate epimerase OS=Granulibacter bethesd... [more]

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Properties
Property NameValue
Genbank descriptionEST0300 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB226 similar to diaminopimelate epimerase (acc# NP_190926), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bp
ACATCTTTCTAGCTAACAATGCGCGTCTGCAAAATTCAGGTAATCTGAGA
CAAGGAAGTTCTCGACAATAAATTAATTTAGCAGGACCGATCCATAAAAC
ACTACTTCTGCCGGGCCAGTCATATATACATGGTTGTCTTCCTCCTTCCA
CTCAATATCCAATGGCCCTCCAGGTAGATCAACAGTGCATCTTCTCTCAG
CATGACCCTCAAGAACTGCTGCGACCACAACTGCACAAGCACCAGTCCCA
CATGCCAGGGTTGCTCCAGCCCCACGTTCCCAAACACGCATCTTCAGTTG
TGAAGGAGAAATAATCTCCACAAATTCTGTATTAGTTCGTGCTGGGAACA
CAGAATGATGCTCAAATTTAGGACCAATTTCAGCCAAGTTTAGTTTATCA
ACCTTCAAATTCTGCCCTTCTTTTG
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