CB322179
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPF (Diaminopimelate epimerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dapF PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.531e-14 Identity = 43/113 (38.05%), Postives = 57/113 (50.44%), Query Frame = -3 Query: 79 LKVDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408 L+V +N A E+GPK EHH FPAR N F+++I + ++RVWER + +G + +DLPGG L IEW V MTGPA V+ G V L Sbjct: 164 LRVSDINTAPVHELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_NITOC (Diaminopimelate epimerase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=dapF PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.531e-14 Identity = 41/108 (37.96%), Postives = 54/108 (50.00%), Query Frame = -3 Query: 79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402 VD +A GP E H FP R N F +I+SP L++RV+ER G + VDLPGG L I W+ + V+M+GPAE+VF GS+ L Sbjct: 169 VDTAPVAHWGPLLESHPRFPQRVNVGFAQIVSPGHLRLRVYERGAGETPACGTGACAAAVIGKRRGWLSGQVNVDLPGGRLGIHWEGDGKSVWMSGPAEIVFKGSIEL 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSESM (Diaminopimelate epimerase OS=Pseudomonas syringae pv. tomato GN=dapF PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.305e-14 Identity = 42/113 (37.17%), Postives = 57/113 (50.44%), Query Frame = -3 Query: 79 LKVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408 L+VD +N A + GPK EHH FPAR N F+ ++ + ++RVWER + +G + +DLPGG L IEW + V MTGPA V+ G V L Sbjct: 164 LRVDDINNAPVHTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSEHT (Diaminopimelate epimerase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dapF PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.305e-14 Identity = 43/113 (38.05%), Postives = 56/113 (49.56%), Query Frame = -3 Query: 79 LKVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408 L+VD + A++ GP E+H FP R N F+++IS +K+RVWER ++ VDLPGG L I W E + V MTGPAE VF G V L Sbjct: 164 LEVDDITTAQVDILGPLLENHERFPQRANIGFMQVISKEHIKLRVWERGVNETLACGTGACAAMVIGFIQNKLISTVQVDLPGGSLQIRWNGEGHPVRMTGPAEHVFDGQVAL 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_METSB (Diaminopimelate epimerase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=dapF PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.305e-14 Identity = 39/98 (39.80%), Postives = 49/98 (50.00%), Query Frame = -3 Query: 97 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 390 +LA IGP EH +FP R N I+SP +++++VWER G RR TV LPGG LDI W+E D+ V MTGP F Sbjct: 179 DLAAIGPVLEHDPLFPERANISLARIVSPERIELKVWERGVGLTLACGSAACAALVAAARRGLTGRRATVALPGGELDIFWRESDDMVVMTGPVAFEF 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SACD2 (Diaminopimelate epimerase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dapF PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.638e-14 Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = -3 Query: 85 IGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 378 +GP+ E H FP + N F++++SPS++ +RV+ER L+G E V+LPGG L I W+ D+ V MTGPA VF+G V Sbjct: 178 LGPEIEAHPHFPKKVNAGFMQVVSPSEINLRVYERGAGETLACGTGACAAVVAGRLQGLLENTVKVNLPGGSLSITWEGVDSPVMMTGPATTVFHGQV 275
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSEFL (Diaminopimelate epimerase OS=Pseudomonas fluorescens GN=dapF PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.638e-14 Identity = 43/113 (38.05%), Postives = 57/113 (50.44%), Query Frame = -3 Query: 79 LKVDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408 L+V +N A E+GPK EHH FPAR N F+++I + ++RVWER + +G + +DLPGG L IEW V MTGPA V+ G V L Sbjct: 164 LRVADINSAPVHELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_OCHA4 (Diaminopimelate epimerase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=dapF PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.363e-14 Identity = 39/100 (39.00%), Postives = 50/100 (50.00%), Query Frame = -3 Query: 88 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 387 L + GP EHH +FP R N + SP + +R WER V R TV++PGGPL IEW+++D HV MTGPAE F G+ Sbjct: 179 LEKFGPLLEHHPIFPERANISIAHVTSPETIDLRTWERGAGLTRACGSAACAAAVSAVRTRRTGRTVTVNVPGGPLRIEWRDDD-HVMMTGPAEWEFSGT 277
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_OCEIH (Diaminopimelate epimerase OS=Oceanobacillus iheyensis GN=dapF PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.363e-14 Identity = 42/106 (39.62%), Postives = 54/106 (50.94%), Query Frame = -3 Query: 91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERR--CTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402 ++K L +GP E FP N EF+E++SP++L RVWER L + V L GG L+IEWK EDNHV+MTGPAEV+ G Sbjct: 175 IEKAPLETLGPTIEKDMRFPESINVEFIEVVSPTELNFRVWERGSGITQACGTGACAAVVAATLNEKVTKSHPIVVHLAGGDLNIEWK-EDNHVWMTGPAEVIATG 279
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BEII9 (Diaminopimelate epimerase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dapF PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.616e-14 Identity = 37/101 (36.63%), Postives = 48/101 (47.52%), Query Frame = -3 Query: 97 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 399 D +LA +GP EHH +FP R N ++SP + ++VWER V G A R + LPGG L I W+ D+HV MTGP F Sbjct: 183 DACDLALVGPVLEHHPLFPDRANISIATVVSPDHIVLKVWERGAGATLACGSAACATLVAAVRHGLAAREARISLPGGDLTIAWRAADDHVIMTGPVTFEF 283 The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 204
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Sequences
The
following sequences are available for this feature:
EST sequence >CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bpback to top |