CB322179

Overview
NameCB322179
Unique NameCB322179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPF (Diaminopimelate epimerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.531e-14
Identity = 43/113 (38.05%), Postives = 57/113 (50.44%), Query Frame = -3
Query:   79 LKVDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408
            L+V  +N A   E+GPK EHH  FPAR N  F+++I   + ++RVWER                   + +G  +    +DLPGG L IEW      V MTGPA  V+ G V L
Sbjct:  164 LRVSDINTAPVHELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_NITOC (Diaminopimelate epimerase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=dapF PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.531e-14
Identity = 41/108 (37.96%), Postives = 54/108 (50.00%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            VD   +A  GP  E H  FP R N  F +I+SP  L++RV+ER                      G    +  VDLPGG L I W+ +   V+M+GPAE+VF GS+ L
Sbjct:  169 VDTAPVAHWGPLLESHPRFPQRVNVGFAQIVSPGHLRLRVYERGAGETPACGTGACAAAVIGKRRGWLSGQVNVDLPGGRLGIHWEGDGKSVWMSGPAEIVFKGSIEL 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSESM (Diaminopimelate epimerase OS=Pseudomonas syringae pv. tomato GN=dapF PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.305e-14
Identity = 42/113 (37.17%), Postives = 57/113 (50.44%), Query Frame = -3
Query:   79 LKVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408
            L+VD +N A +   GPK EHH  FPAR N  F+ ++   + ++RVWER                   + +G  +    +DLPGG L IEW    + V MTGPA  V+ G V L
Sbjct:  164 LRVDDINNAPVHTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSEHT (Diaminopimelate epimerase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dapF PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.305e-14
Identity = 43/113 (38.05%), Postives = 56/113 (49.56%), Query Frame = -3
Query:   79 LKVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408
            L+VD +  A++   GP  E+H  FP R N  F+++IS   +K+RVWER                    ++        VDLPGG L I W  E + V MTGPAE VF G V L
Sbjct:  164 LEVDDITTAQVDILGPLLENHERFPQRANIGFMQVISKEHIKLRVWERGVNETLACGTGACAAMVIGFIQNKLISTVQVDLPGGSLQIRWNGEGHPVRMTGPAEHVFDGQVAL 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_METSB (Diaminopimelate epimerase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=dapF PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.305e-14
Identity = 39/98 (39.80%), Postives = 49/98 (50.00%), Query Frame = -3
Query:   97 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 390
            +LA IGP  EH  +FP R N     I+SP +++++VWER                      G   RR TV LPGG LDI W+E D+ V MTGP    F
Sbjct:  179 DLAAIGPVLEHDPLFPERANISLARIVSPERIELKVWERGVGLTLACGSAACAALVAAARRGLTGRRATVALPGGELDIFWRESDDMVVMTGPVAFEF 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SACD2 (Diaminopimelate epimerase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dapF PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.638e-14
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = -3
Query:   85 IGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 378
            +GP+ E H  FP + N  F++++SPS++ +RV+ER                    L+G  E    V+LPGG L I W+  D+ V MTGPA  VF+G V
Sbjct:  178 LGPEIEAHPHFPKKVNAGFMQVVSPSEINLRVYERGAGETLACGTGACAAVVAGRLQGLLENTVKVNLPGGSLSITWEGVDSPVMMTGPATTVFHGQV 275          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSEFL (Diaminopimelate epimerase OS=Pseudomonas fluorescens GN=dapF PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.638e-14
Identity = 43/113 (38.05%), Postives = 57/113 (50.44%), Query Frame = -3
Query:   79 LKVDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408
            L+V  +N A   E+GPK EHH  FPAR N  F+++I   + ++RVWER                   + +G  +    +DLPGG L IEW      V MTGPA  V+ G V L
Sbjct:  164 LRVADINSAPVHELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_OCHA4 (Diaminopimelate epimerase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=dapF PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.363e-14
Identity = 39/100 (39.00%), Postives = 50/100 (50.00%), Query Frame = -3
Query:   88 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 387
            L + GP  EHH +FP R N     + SP  + +R WER                   V      R  TV++PGGPL IEW+++D HV MTGPAE  F G+
Sbjct:  179 LEKFGPLLEHHPIFPERANISIAHVTSPETIDLRTWERGAGLTRACGSAACAAAVSAVRTRRTGRTVTVNVPGGPLRIEWRDDD-HVMMTGPAEWEFSGT 277          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_OCEIH (Diaminopimelate epimerase OS=Oceanobacillus iheyensis GN=dapF PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.363e-14
Identity = 42/106 (39.62%), Postives = 54/106 (50.94%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERR--CTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            ++K  L  +GP  E    FP   N EF+E++SP++L  RVWER                    L     +     V L GG L+IEWK EDNHV+MTGPAEV+  G
Sbjct:  175 IEKAPLETLGPTIEKDMRFPESINVEFIEVVSPTELNFRVWERGSGITQACGTGACAAVVAATLNEKVTKSHPIVVHLAGGDLNIEWK-EDNHVWMTGPAEVIATG 279          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BEII9 (Diaminopimelate epimerase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dapF PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.616e-14
Identity = 37/101 (36.63%), Postives = 48/101 (47.52%), Query Frame = -3
Query:   97 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 399
            D  +LA +GP  EHH +FP R N     ++SP  + ++VWER                   V  G A R   + LPGG L I W+  D+HV MTGP    F
Sbjct:  183 DACDLALVGPVLEHHPLFPDRANISIATVVSPDHIVLKVWERGAGATLACGSAACATLVAAVRHGLAAREARISLPGGDLTIAWRAADDHVIMTGPVTFEF 283          
The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
DAPF_PSEPF2.531e-1438.05Diaminopimelate epimerase OS=Pseudomonas fluoresce... [more]
DAPF_NITOC2.531e-1437.96Diaminopimelate epimerase OS=Nitrosococcus oceani ... [more]
DAPF_PSESM3.305e-1437.17Diaminopimelate epimerase OS=Pseudomonas syringae ... [more]
DAPF_PSEHT3.305e-1438.05Diaminopimelate epimerase OS=Pseudoalteromonas hal... [more]
DAPF_METSB3.305e-1439.80Diaminopimelate epimerase OS=Methylocella silvestr... [more]
DAPF_SACD25.638e-1437.76Diaminopimelate epimerase OS=Saccharophagus degrad... [more]
DAPF_PSEFL5.638e-1438.05Diaminopimelate epimerase OS=Pseudomonas fluoresce... [more]
DAPF_OCHA47.363e-1439.00Diaminopimelate epimerase OS=Ochrobactrum anthropi... [more]
DAPF_OCEIH7.363e-1439.62Diaminopimelate epimerase OS=Oceanobacillus iheyen... [more]
DAPF_BEII99.616e-1436.63Diaminopimelate epimerase OS=Beijerinckia indica s... [more]

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Properties
Property NameValue
Genbank descriptionEST0300 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB226 similar to diaminopimelate epimerase (acc# NP_190926), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bp
ACATCTTTCTAGCTAACAATGCGCGTCTGCAAAATTCAGGTAATCTGAGA
CAAGGAAGTTCTCGACAATAAATTAATTTAGCAGGACCGATCCATAAAAC
ACTACTTCTGCCGGGCCAGTCATATATACATGGTTGTCTTCCTCCTTCCA
CTCAATATCCAATGGCCCTCCAGGTAGATCAACAGTGCATCTTCTCTCAG
CATGACCCTCAAGAACTGCTGCGACCACAACTGCACAAGCACCAGTCCCA
CATGCCAGGGTTGCTCCAGCCCCACGTTCCCAAACACGCATCTTCAGTTG
TGAAGGAGAAATAATCTCCACAAATTCTGTATTAGTTCGTGCTGGGAACA
CAGAATGATGCTCAAATTTAGGACCAATTTCAGCCAAGTTTAGTTTATCA
ACCTTCAAATTCTGCCCTTCTTTTG
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