CB322212

Overview
NameCB322212
Unique NameCB322212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_META3 (Putative thiazole biosynthetic enzyme OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_0798 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.015e-16
Identity = 46/139 (33.09%), Postives = 76/139 (54.68%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            K+   +  ED+I+K G+V GVV N   ++        +DP  + AK V+ + GHD     T  ++ + +G++  +PG K+L  +  E+ +++ T+E+ PG+ V GM      G  RMG  FG M ISG+  A + L+ L
Sbjct:  127 KVLTGIVVEDVILKEGKVSGVVINSYAINK---AGLHIDPLTINAKYVIDATGHDASVACTLARKNEDLGLV--IPGEKSLWADEGENGLLKYTKELFPGLFVCGMASNATHGGYRMGAVFGGMYISGKIVADMILEKL 260          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_FERNB (Putative thiazole biosynthetic enzyme OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=Fnod_1422 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.015e-16
Identity = 56/175 (32.00%), Postives = 83/175 (47.43%), Query Frame = 3
Query:    6 EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKA-------------LDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHL 491
            ++D ++V+   A+  ++ M     +    +FN V  EDL++   R+ GVV NW         +  +DP  + AK  V   GH     A  V+ L   G+I+SV G                +D    E  +V  T+EI PG+ V GM    + G PRMGP FG M++SG +AA L
Sbjct:   93 KEDEFIVVD--AVHFASAMLYNATKNGAYIFNNVFVEDLVMYNERISGVVINWMPTIKE---KLHVDPITVVAKFTVDGTGHP----ANLVRLLSKRGIINSVKGSSENLCSCGVVEYEFPMDAENGEKFVVENTKEIYPGLYVMGMAAVSVGGGPRMGPIFGGMIMSGLRAAEL 258          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_DESOH (Putative thiazole biosynthetic enzyme OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=Dole_2426 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.015e-16
Identity = 53/154 (34.42%), Postives = 80/154 (51.95%), Query Frame = 3
Query:   51 STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDS--VPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            ST+ S+  A+  V +FN V  ED++++  R+ G+V NW+ V M       +DP  M A  V+ + GH         K++      DS  + G K++  + AE   +  TRE+ PG+ V GM      G PRMG  FG M++SG+K A   L+ L
Sbjct:  108 STLTSQA-AKAGVAIFNCVTVEDVMIRPDRIVGLVLNWSPVEM---AGLHVDPLAMRASFVIDATGHATEVVHVVAKKVPGTLRTDSGKIEGEKSMWSDRAESLTLENTREVYPGLYVAGMAGNATFGGPRMGAIFGGMLLSGEKVAAEILERL 257          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_SULSO (Putative thiazole biosynthetic enzyme OS=Sulfolobus solfataricus GN=SSO0436 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.162e-16
Identity = 46/134 (34.33%), Postives = 71/134 (52.99%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAA 485
            K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T ++  G+  TGM V E+ G PRMGP FGAM++SG+  A
Sbjct:  125 KIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYATGMAVTEVKGLPRMGPIFGAMVLSGKAVA 253          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_METVS (Putative thiazole biosynthetic enzyme OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0663 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.197e-15
Identity = 49/141 (34.75%), Postives = 73/141 (51.77%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQ 512
            K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD    +T  ++ K +G+   VPG K++     E+++ R TREI PG+ V GM         RMG  FG M +SG+K A L L+ L +
Sbjct:  126 KILTGIVVEDLILKEDKISGVVIQSYSIEK---AGLHVDPITISAKYVIDSTGHDASVVSTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLFVCGMTANAYHAGYRMGAIFGGMYLSGKKCAELILEKLNK 261          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_SULIY (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=YG5714_1786 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.041e-15
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T ++  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  125 KIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_SULIM (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=M1425_1670 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.041e-15
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T ++  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  125 KIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_SULIL (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=LS215_1798 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.041e-15
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T ++  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  125 KIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_SULIK (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=M164_1717 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.041e-15
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T ++  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  125 KIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_SULIA (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.27) GN=M1627_1786 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.041e-15
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T ++  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  125 KIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
The following BLAST results are available for this feature:
BLAST of CB322212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
THI4_META37.015e-1633.09Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_FERNB7.015e-1632.00Putative thiazole biosynthetic enzyme OS=Fervidoba... [more]
THI4_DESOH7.015e-1634.42Putative thiazole biosynthetic enzyme OS=Desulfoco... [more]
THI4_SULSO9.162e-1634.33Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METVS1.197e-1534.75Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_SULIY2.041e-1533.33Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIM2.041e-1533.33Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIL2.041e-1533.33Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIK2.041e-1533.33Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIA2.041e-1533.33Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0336 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB352 similar to thiamin biosynthesis protein thi1 (acc# T10474), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322212 ID=CB322212; Name=CB322212; organism=Citrus sinensis; type=EST; length=552bp
ACGACGAGCAAGACAACTACGTCGTGATCAAGCACGCCGCGTTGTTCACT
TCAACAATCATGAGCAAGCTGTTGGCGAGGCCAAACGTGAAGTTGTTCAA
CGCTGTTGCAGCTGAGGATTTGATCGTCAAGGGAGGGAGAGTAGGTGGCG
TCGTCACAAACTGGGCCTTGGTGTCTATGAATCACGACACACAGTCTTGC
ATGGACCCCAATGTGATGGAGGCCAAGATTGTGGTCAGCTCGTGTGGCCA
TGACGGCCCTTTTGGGGCTACCGGTGTTAAGAGGCTTAAGAGTATTGGCA
TGATTGACTCCGTCCCCGGAATGAAGGCTCTCGATATGAACACTGCAGAG
GATGCTATCGTTAGGCTTACCAGGGAGATCGTGCCTGGCATGATTGTCAC
GGGCATGGAAGTCGCAGAGATCGACGGTGCCCCTAGAATGGGACCTACAT
TCGGGGCCATGATGATTTCAGGGCAGAAGGCAGCCCATTTGGCGTTGAAG
GCATTGGGGCAGCCGAATGCGATAGATGGGACATTCAGTGAAGTTACGGA
AG
back to top