CB322212

Overview
NameCB322212
Unique NameCB322212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_METMP (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis GN=MMP1352 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.547e-15
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            K+   +  EDLI+K  +V GVV     +         +DP  + AK V+ S GHD     T  ++ K +G+   VPG K++  +  E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A L L+ L
Sbjct:  126 KILTGIVVEDLILKEDKVSGVVIQSYSIEK---AGLHIDPITISAKYVIDSTGHDASVINTLARKNKDLGI--EVPGEKSMWADKGENSLTRNTREVFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAELILEKL 259          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_METM7 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0597 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.756e-15
Identity = 48/139 (34.53%), Postives = 71/139 (51.08%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD     T  ++ K +G+   VPG K++     E+++ R TREI PG+ V GM         RMG  FG M +SG+K A + L+ L
Sbjct:  126 KILTGIVVEDLILKEDKIAGVVIQSYAIEK---AGLHIDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKL 259          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_METBU (Putative thiazole biosynthetic enzyme OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_2109 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.756e-15
Identity = 44/142 (30.99%), Postives = 78/142 (54.93%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMID-SVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG 509
            ++FN V  ED++++    + G+V NW  V +    +  +DP  + +K+VV   GH     +T  +++    + +  V G K +  +  E  ++  T+E+ P + V GM    + GAPRMGP FG M++SG++ A L ++ LG
Sbjct:  120 EIFNLVNVEDVMIRENDEICGLVINWTAVEIG---KLHVDPLAIRSKVVVDGTGHPAVVCSTVQRKVPGAKLGELGVVGEKPMWADVGEKMLLDTTKEVYPNLYVAGMAANAVAGAPRMGPVFGGMLLSGKQVAELIIERLG 258          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_PYRIL (Putative thiazole biosynthetic enzyme OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_1998 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.013e-14
Identity = 47/141 (33.33%), Postives = 76/141 (53.90%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            K+   V  +D+I +G   RV G++  W  + M+    S +DP   +AK V+ + GHD    +   +++  +G+   V G K+     +E  +V  T  + PG+ V GM V  + G PRMGP FG M++SG++AA +  K L
Sbjct:  117 KIILGVHVDDVIFRGDPPRVVGLLWVWTPIQMSG---SHVDPLYTQAKAVLDATGHDAEVISIAARKVPELGI--EVRGEKSAWAEVSEKLVVEHTGRVAPGLYVAGMAVCTVHGLPRMGPIFGGMLLSGRRAAEIIHKDL 252          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_METM6 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_1321 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.323e-14
Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD     T  ++ K +G+   VPG K++     E+++ R TREI PG+ V GM         RMG  FG M +SG+K A + L+ +
Sbjct:  126 KILTGIVVEDLILKEDKIAGVVIQSYAIEK---AGLHIDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKM 259          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_METM5 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0226 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.323e-14
Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD     T  ++ K +G+   VPG K++     E+++ R TREI PG+ V GM         RMG  FG M +SG+K A + L+ +
Sbjct:  126 KILTGIVVEDLILKEDKIAGVVIQSYAIEK---AGLHIDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKM 259          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_SULIN (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=YN1551_1140 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.728e-14
Identity = 46/141 (32.62%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  + G K+     AE+  V  T ++  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  125 KIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IAGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_PYRCJ (Putative thiazole biosynthetic enzyme OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=Pcal_1555 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.257e-14
Identity = 44/143 (30.77%), Postives = 75/143 (52.45%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQ 512
            K+   V  +D+I +G   RV G++  W  + M+      +DP   +AK V+ + GHD    +   +++  +G+   + G K+     +E  +V  T  + PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L +
Sbjct:  117 KILLGVHVDDVIFRGDPPRVAGLLWIWTPIQMSG---MHVDPLYTQAKAVIDATGHDAEVVSVAARKVPELGL--QLQGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGRKVAEVVAKDLAE 254          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_THENV (Putative thiazole biosynthetic enzyme OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1052 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.028e-14
Identity = 45/141 (31.91%), Postives = 75/141 (53.19%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            K+   V  +D+I +G   RV G++  W  + M+    S +DP   +A+ V+ + GHD    +   +++  +G+   V G K+     +E  +V  T  + PG+   GM V  + G PRMGP FG M++SG++AA +  K L
Sbjct:  117 KIILGVHVDDVIFRGDPPRVAGLLWVWTPIQMSG---SHVDPLYTQARAVLDATGHDAEVISIASRKVPELGV--EVRGEKSAWAEVSEKLVVEHTGRVAPGLYAAGMAVCAVHGLPRMGPIFGGMLLSGRRAAEIIHKDL 252          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_PYRAE (Putative thiazole biosynthetic enzyme OS=Pyrobaculum aerophilum GN=PAE0175 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.028e-14
Identity = 45/141 (31.91%), Postives = 74/141 (52.48%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            K+   V  +D+I +G   RV G++  W  + M+      +DP   +AK V+ + GHD    +   +++  +G+   V G K+     +E  +V  T  + PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L
Sbjct:  117 KIILGVHVDDVIFRGDPPRVTGLLWIWTPIQMSG---MHVDPLYTQAKAVIDATGHDAEVVSVAARKVPELGI--QVVGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGKKVAEVVYKDL 252          
The following BLAST results are available for this feature:
BLAST of CB322212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
THI4_METMP4.547e-1535.25Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM77.756e-1534.53Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METBU7.756e-1530.99Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_PYRIL1.013e-1433.33Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_METM61.323e-1433.81Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM51.323e-1433.81Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_SULIN1.728e-1432.62Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_PYRCJ2.257e-1430.77Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_THENV5.028e-1431.91Putative thiazole biosynthetic enzyme OS=Thermopro... [more]
THI4_PYRAE5.028e-1431.91Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]

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Properties
Property NameValue
Genbank descriptionEST0336 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB352 similar to thiamin biosynthesis protein thi1 (acc# T10474), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322212 ID=CB322212; Name=CB322212; organism=Citrus sinensis; type=EST; length=552bp
ACGACGAGCAAGACAACTACGTCGTGATCAAGCACGCCGCGTTGTTCACT
TCAACAATCATGAGCAAGCTGTTGGCGAGGCCAAACGTGAAGTTGTTCAA
CGCTGTTGCAGCTGAGGATTTGATCGTCAAGGGAGGGAGAGTAGGTGGCG
TCGTCACAAACTGGGCCTTGGTGTCTATGAATCACGACACACAGTCTTGC
ATGGACCCCAATGTGATGGAGGCCAAGATTGTGGTCAGCTCGTGTGGCCA
TGACGGCCCTTTTGGGGCTACCGGTGTTAAGAGGCTTAAGAGTATTGGCA
TGATTGACTCCGTCCCCGGAATGAAGGCTCTCGATATGAACACTGCAGAG
GATGCTATCGTTAGGCTTACCAGGGAGATCGTGCCTGGCATGATTGTCAC
GGGCATGGAAGTCGCAGAGATCGACGGTGCCCCTAGAATGGGACCTACAT
TCGGGGCCATGATGATTTCAGGGCAGAAGGCAGCCCATTTGGCGTTGAAG
GCATTGGGGCAGCCGAATGCGATAGATGGGACATTCAGTGAAGTTACGGA
AG
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