CB322212

Overview
NameCB322212
Unique NameCB322212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_HALSA (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarium GN=VNG_2604G PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 53/192 (27.60%), Postives = 92/192 (47.92%), Query Frame = 3
Query:    3 DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHD----------GPFGATGVKRLK--SIGMIDS-----------VPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            DE+++ + +  A    S +++        ++ N     D++V+    V G V NW  V       +C+DP  +EA +VV + GHD          G   A G++ ++  + GM  S            PG  ++ +  +ED +V  T ++  G++  G+  A + G  RMGPTFGAM++SG+ AA+  +  L
Sbjct:  100 DEENDGLAVADAPHACSAMITAA-CDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATGHDAVVVSKLHERGVLEADGIEHVEEHATGMDQSGDGEYGAPGHDSPGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPTFGAMLLSGKVAANAVMDEL 290          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_HALS3 (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE4651F PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 53/192 (27.60%), Postives = 92/192 (47.92%), Query Frame = 3
Query:    3 DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHD----------GPFGATGVKRLK--SIGMIDS-----------VPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            DE+++ + +  A    S +++        ++ N     D++V+    V G V NW  V       +C+DP  +EA +VV + GHD          G   A G++ ++  + GM  S            PG  ++ +  +ED +V  T ++  G++  G+  A + G  RMGPTFGAM++SG+ AA+  +  L
Sbjct:  100 DEENDGLAVADAPHACSAMITAA-CDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATGHDAVVVSKLHERGVLEADGIEHVEEHATGMDQSGDGEYGAPGHDSPGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPTFGAMLLSGKVAANAVMDEL 290          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_ARCFU (Putative thiazole biosynthetic enzyme OS=Archaeoglobus fulgidus GN=AF_0702 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 50/158 (31.65%), Postives = 82/158 (51.90%), Query Frame = 3
Query:   48 TSTIMSKLLARP---NVKLFNAVAAEDLIVKGGRVG--GVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            ++  M+KL A+      K+ + V+ ED+I +   +G  GV   W+ V ++      +DP  + ++ VV + GHD    +   ++   I +  SV G ++     AE  IV  T +IV G+   GM VA +   PRMGP FG M++SG+K A +  + L
Sbjct:  107 SAEFMAKLAAKAIDAGAKIIHGVSVEDVIFRDDPLGVRGVCIQWSAVEISG---LHVDPLFLRSRAVVDATGHDAEVISVAARK---IPLEVSVVGERSAYSEVAEREIVEKTGKIVKGLYAAGMAVAAVHNLPRMGPIFGGMLLSGKKVAEIVAEDL 258          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_DESMR (Putative thiazole biosynthetic enzyme OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=DMR_31420 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.617e-12
Identity = 57/174 (32.76%), Postives = 91/174 (52.30%), Query Frame = 3
Query:    9 QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKR--LKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQK-AAHLALKALG 509
            +DNY      A  T+   +  LA    K+FN ++ ED++++      RV G+V N + V +       +DP V+ +K +V + GH      T V++  ++       + G +++  +TAE   V+ TREI PG+ V GM      G+ RMGP FG M++SG+K AA +A K  G
Sbjct:   95 KDNYFTADAVAATTTLASAACLA--GAKIFNCMSVEDVMLREENGVKRVTGIVINSSPVEI---AGLHVDPVVLGSKYLVEATGHAVEVLQTLVRKNDVRLNTPSGGIEGEQSMWADTAEINTVKNTREIFPGLYVAGMAANASYGSYRMGPIFGGMLLSGEKVAADIAAKLKG 263          
BLAST of CB322212 vs. ExPASy Swiss-Prot
Match: THI4_METJA (Putative thiazole biosynthetic enzyme OS=Methanocaldococcus jannaschii GN=MJ0601 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.759e-12
Identity = 46/139 (33.09%), Postives = 69/139 (49.64%), Query Frame = 3
Query:   90 KLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 506
            K+   +  EDLI++   V GVV N   +         +DP  + +K+VV + GH+       VK+ K   +   VPG K++     E+A++R TRE+ P + V GM      G  RMG  FG M +SG+  A L  + L
Sbjct:  127 KILTGIVVEDLILREDGVAGVVINSYAIER---AGLHIDPLTIRSKVVVDATGHEASIVNILVKKNK---LEADVPGEKSMWAEKGENALLRNTREVYPNLFVCGMAANASHGGYRMGAIFGGMYLSGKLCAELITEKL 259          
The following BLAST results are available for this feature:
BLAST of CB322212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
THI4_HALSA8.576e-1427.60Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALS38.576e-1427.60Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_ARCFU1.463e-1331.65Putative thiazole biosynthetic enzyme OS=Archaeogl... [more]
THI4_DESMR1.617e-1232.76Putative thiazole biosynthetic enzyme OS=Desulfovi... [more]
THI4_METJA2.759e-1233.09Putative thiazole biosynthetic enzyme OS=Methanoca... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0336 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB352 similar to thiamin biosynthesis protein thi1 (acc# T10474), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322212 ID=CB322212; Name=CB322212; organism=Citrus sinensis; type=EST; length=552bp
ACGACGAGCAAGACAACTACGTCGTGATCAAGCACGCCGCGTTGTTCACT
TCAACAATCATGAGCAAGCTGTTGGCGAGGCCAAACGTGAAGTTGTTCAA
CGCTGTTGCAGCTGAGGATTTGATCGTCAAGGGAGGGAGAGTAGGTGGCG
TCGTCACAAACTGGGCCTTGGTGTCTATGAATCACGACACACAGTCTTGC
ATGGACCCCAATGTGATGGAGGCCAAGATTGTGGTCAGCTCGTGTGGCCA
TGACGGCCCTTTTGGGGCTACCGGTGTTAAGAGGCTTAAGAGTATTGGCA
TGATTGACTCCGTCCCCGGAATGAAGGCTCTCGATATGAACACTGCAGAG
GATGCTATCGTTAGGCTTACCAGGGAGATCGTGCCTGGCATGATTGTCAC
GGGCATGGAAGTCGCAGAGATCGACGGTGCCCCTAGAATGGGACCTACAT
TCGGGGCCATGATGATTTCAGGGCAGAAGGCAGCCCATTTGGCGTTGAAG
GCATTGGGGCAGCCGAATGCGATAGATGGGACATTCAGTGAAGTTACGGA
AG
back to top