CB322223

Overview
NameCB322223
Unique NameCB322223
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length410
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322223 vs. ExPASy Swiss-Prot
Match: UCP3_RAT (Mitochondrial uncoupling protein 3 OS=Rattus norvegicus GN=Ucp3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.792e-12
Identity = 40/108 (37.04%), Postives = 55/108 (50.93%), Query Frame = 3
Query:    3 DQVKEMILKKGVMRDGLGTHVTXXXXXXXXXXXXXNPVDVIKTRVMNMTVEAGRDPP--YKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKLL 320
            D +KE +L   +  D    H               +PVDV+KTR MN        PP  Y+  L C L+ V  EGP A YKGF+P+  R G + V++FVT EQ+++ L
Sbjct:  197 DIIKEKLLDSHLFTDNFPCHFVSAFGAGFCATVVASPVDVVKTRYMNA-------PPGRYRSPLHCMLRMVAQEGPTAFYKGFMPSFLRLGSWNVMMFVTYEQLKRAL 297          
BLAST of CB322223 vs. ExPASy Swiss-Prot
Match: UCP4_HUMAN (Mitochondrial uncoupling protein 4 OS=Homo sapiens GN=SLC25A27 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.809e-12
Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 3
Query:    3 DQVKEMILKKGVMRDGLGTHVTXXXXXXXXXXXXXNPVDVIKTRVMNMTVEA-GRDPPYKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKL 317
            D VK  ++    + D + TH                P DVIK+R+MN   +  GR   YK + DC ++ V+ EG M+LYKGF+P+  R  P+++V ++T E++R++
Sbjct:  212 DTVKHYLVLNTPLEDNIMTHGLSSLCSGLVASILGTPADVIKSRIMNQPRDKQGRGLLYKSSTDCLIQAVQGEGFMSLYKGFLPSWLRMTPWSMVFWLTYEKIREM 317          
BLAST of CB322223 vs. ExPASy Swiss-Prot
Match: UCP1_HUMAN (Mitochondrial brown fat uncoupling protein 1 OS=Homo sapiens GN=UCP1 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.161e-11
Identity = 36/110 (32.73%), Postives = 57/110 (51.82%), Query Frame = 3
Query:    3 DQVKEMILKKGVMRDGLGTHVTXXXXXXXXXXXXXNPVDVIKTRVMNMTVEAGRDPP--YKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKLLKE 326
            D +KE  +K  ++ D +  H+              +PVDV+KTR +N        PP  YK   +CA+K    EGP A +KG +P+  R G + V++FV  EQ+++ L +
Sbjct:  196 DLMKEAFVKNNILADDVPCHLVSALIAGFCATAMSSPVDVVKTRFIN-------SPPGQYKSVPNCAMKVFTNEGPTAFFKGLVPSFLRLGSWNVIMFVCFEQLKRELSK 298          
BLAST of CB322223 vs. ExPASy Swiss-Prot
Match: DIC_MOUSE (Mitochondrial dicarboxylate carrier OS=Mus musculus GN=Slc25a10 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.517e-11
Identity = 38/104 (36.54%), Postives = 54/104 (51.92%), Query Frame = 3
Query:    3 DQVKEMILKKGVMRDGLGTHVTXXXXXXXXXXXXXNPVDVIKTRVMNMTVEAGRDPPYKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRK 314
            DQ K+++L  G + D + TH                P+DV+KTR+MN   E      Y+G   CA++T +  GP A +KG  P   R  P TV+ F+ LEQ+RK
Sbjct:  182 DQAKQLVLSTGYLSDNIFTHFVSSFIAGGCATFLCQPLDVLKTRLMNSKGE------YQGVFHCAMETAKL-GPQAFFKGLFPAGIRLIPHTVLTFMFLEQLRK 278          
BLAST of CB322223 vs. ExPASy Swiss-Prot
Match: UCP1_SUNMU (Mitochondrial brown fat uncoupling protein 1 OS=Suncus murinus GN=UCP1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = 3
Query:    3 DQVKEMILKKGVMRDGLGTHVTXXXXXXXXXXXXXNPVDVIKTRVMNMTVEAGRDPP--YKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKLL 320
            D +KE ++K  V+ D +  H+              +PVDV+KTR +N        PP  Y    +CAL  ++ EG  A +KGF+P+  R G +TV++ VT EQ++K L
Sbjct:  197 DVLKEALVKNNVLADDIPCHLLAALTAGFCTTALASPVDVVKTRFIN-------SPPGYYPHVHNCALNMLQKEGLRAFFKGFVPSFLRLGSWTVIMHVTFEQLKKEL 297          
BLAST of CB322223 vs. ExPASy Swiss-Prot
Match: UCP1_CANFA (Mitochondrial brown fat uncoupling protein 1 OS=Canis familiaris GN=UCP1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11
Identity = 35/106 (33.02%), Postives = 56/106 (52.83%), Query Frame = 3
Query:    3 DQVKEMILKKGVMRDGLGTHVTXXXXXXXXXXXXXNPVDVIKTRVMNMTVEAGRDPPYKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKLL 320
            D +KE ++K  ++ D L  H               +PVDV+KTR +N   E      Y    +CA+  +  EGP+A +KGF+P+  R G + V++FV  EQ+++ L
Sbjct:  198 DLMKEALVKNHLLADDLPCHFLSALVAGFCTTVLSSPVDVVKTRFVNSVPEQ-----YTSVPNCAMTMLTKEGPLAFFKGFVPSFLRLGSWNVIMFVCFEQLKREL 298          
The following BLAST results are available for this feature:
BLAST of CB322223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
UCP3_RAT1.792e-1237.04Mitochondrial uncoupling protein 3 OS=Rattus norve... [more]
UCP4_HUMAN6.809e-1233.96Mitochondrial uncoupling protein 4 OS=Homo sapiens... [more]
UCP1_HUMAN1.161e-1132.73Mitochondrial brown fat uncoupling protein 1 OS=Ho... [more]
DIC_MOUSE1.517e-1136.54Mitochondrial dicarboxylate carrier OS=Mus musculu... [more]
UCP1_SUNMU1.981e-1135.19Mitochondrial brown fat uncoupling protein 1 OS=Su... [more]
UCP1_CANFA1.981e-1133.02Mitochondrial brown fat uncoupling protein 1 OS=Ca... [more]

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Properties
Property NameValue
Genbank descriptionEST0348 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB364 similar to mitochondrial dicarboxylate carrier protein (acc# AAM63236), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322223 ID=CB322223; Name=CB322223; organism=Citrus sinensis; type=EST; length=410bp
ACGATCAGGTGAAGGAGATGATTCTGAAGAAGGGGGTGATGAGGGACGGA
CTGGGGACGCACGTGACGGCGAGTTTTGCGGCGGGGTTTGTGGCGTCGGT
GGCGTCGAATCCGGTGGACGTGATTAAGACGAGGGTCATGAATATGACCG
TTGAGGCTGGGAGGGACCCACCGTATAAGGGGGCCTTAGATTGCGCGTTG
AAGACAGTGAGAGCTGAAGGGCCCATGGCCCTTTATAAAGGGTTCATTCC
AACCATTTCGAGGCAGGGCCCTTTCACTGTAGTGTTGTTTGTGACATTAG
AGCAAGTGAGGAAGCTGCTCAAAGAGTTTTGATTATTTTCGGACGATGAT
AATAAAGTTAAAACGAGGCAAATTTAATGTTATTATTGTAACTGTTAGCA
GTTGTTTCGG
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