CB417301

Overview
NameCB417301
Unique NameCB417301
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12590 contig Csv1_Contig12590:294..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.053e-49
Identity = 85/117 (72.65%), Postives = 99/117 (84.62%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDSKWCLPG--SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345
            T+LFN+G SCG+C+E+KC ND KWC PG  S+ VTATNFCPPNLA  +DNGGWCNPP  HFD+A P FL+IA+YRAGIVPIS+RR+ C K GGIRFT+NGH YFNLVL+TNV GAGD
Sbjct:   74 TSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGD 190          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.001e-49
Identity = 87/118 (73.73%), Postives = 103/118 (87.29%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDSKW-CLPG--SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345
            TALFN GLSCGSCYE++C  D +  CLPG  ++ VTATNFCPPN AL +D GGWCNPP +HFD+AEPAFL+IA++ AGIVP+SFRR+ CA+KGG+RFTVNGH+YFNLVLVTNVGGAGD
Sbjct:   68 TALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGD 185          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 8.913e-49
Identity = 84/117 (71.79%), Postives = 98/117 (83.76%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDSKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345
            TALFNNG SCG+C+E+KC +D KWC  GS  I +TATNFCPPN A  +DNGGWCNPP  HFD+A P FL+IA+YRAGIVP+SFRR+PC K+GGIRFT+NG  YFNLVLVTNV GAG+
Sbjct:   71 TALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGN 187          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 8.913e-49
Identity = 84/118 (71.19%), Postives = 102/118 (86.44%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCE---NDSKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345
            TALFNNGLSCG+C+E++C+     S  CLPGS++VTATNFCPPN AL +D+GGWCNPP  HFDM++P F +IA ++AGIVP+S+RR+ C KKGGIRFT+NGHSYFNLVLVTNVGGAGD
Sbjct:  104 TALFNNGLSCGACFEVRCDAGGGGSHSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGD 221          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.164e-48
Identity = 84/117 (71.79%), Postives = 99/117 (84.62%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDSKWCLPG--SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345
            TALFNNG SCG+C+E+KC +D +WC+PG  SI+VTATNFCPPN A  +D+GGWCNPP +HFD+A P FL+I  YRAGIVP+S+RR+PC K GGIRFTVNG  YFNLVLVTNV GAGD
Sbjct:   76 TALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGD 192          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.520e-48
Identity = 78/115 (67.83%), Postives = 98/115 (85.22%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDSKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345
            TALFN G SCG+C+++KC +D KWC+ G+I VT TNFCPPN A +N+ GGWCNPP  HFD+A+P FL+IAQY+AG+VP+ +RR+ C +KGGIRFT+NGHSYFNLVL+TNV GAGD
Sbjct:   69 TALFNGGQSCGACFQIKCVDDPKWCIGGTITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGD 183          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.287e-47
Identity = 83/119 (69.75%), Postives = 99/119 (83.19%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDS--KWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345
            TALFN+G SCG+C+E+KC N    +WC PGS  I++TATNFCPPN AL +DNGGWCNPP  HFD+A P FL IA+YRAGIVP+S+RR+PC KKGG+RFT+NG  YFNLVL+TNV GAGD
Sbjct:   76 TALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGD 194          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 4.140e-46
Identity = 81/115 (70.43%), Postives = 95/115 (82.61%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDSKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345
            TALFNNG SCG+C+E++C      CL G++ VTATN CPPN AL+ D GGWCNPP  HFDMAEPAF +IAQ RAG+VP+ +RR+ CAK+GGIRFT+ GHSYFNLVLVTNVGGAGD
Sbjct:   67 TALFNNGQSCGACFEVRCGGGGS-CLAGTVAVTATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGD 180          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.875e-44
Identity = 79/116 (68.10%), Postives = 95/116 (81.90%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCEN-DSKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342
            TALFN G SCG+C+ + C+   ++WC PG SI VTATNFCPPN ALS D GGWCNPP +HFDM++PA+  IA YRAGIVP+++RR+PC + GGIRF VNGHSYF LVLVTNVGG+G
Sbjct:   65 TALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSG 180          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.280e-43
Identity = 75/117 (64.10%), Postives = 94/117 (80.34%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCEN--DSKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342
            TALFN+G SCG CY + C++  DS+WCL G S+++TATNFCPPN AL N+NGGWCNPPL+HFDMA+PA+ +I  YR GIVP+ F+R+ C KKGG+RF +NG  YF LV + NVGGAG
Sbjct:   66 TALFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAG 182          
The following BLAST results are available for this feature:
BLAST of CB417301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EXP16_ARATH1.053e-4972.65Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA6_ORYSJ4.001e-4973.73Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ARATH8.913e-4971.79Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA5_ORYSJ8.913e-4971.19Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ARATH1.164e-4871.79Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXP14_ARATH1.520e-4867.83Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA7_ORYSJ1.287e-4769.75Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP11_ORYSJ4.140e-4670.43Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA8_ORYSJ3.875e-4468.10Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP11_ARATH3.280e-4364.10Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]

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Properties
Property NameValue
Genbank descriptionEST0376 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P021 similar to expansin (acc# AAC33530), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417301 ID=CB417301; Name=CB417301; organism=Citrus sinensis; type=EST; length=346bp
ACCGCTCTATTCAACAATGGCCTAAGCTGTGGTTCATGCTATGAAATGAA
ATGTGAAAATGACTCCAAGTGGTGCCTCCCCGGCTCCATCATTGTCACCG
CCACCAACTTCTGCCCACCTAACCTTGCCCTGTCTAACGACAACGGCGGT
TGGTGCAATCCTCCCCTCCAGCACTTTGACATGGCTGAGCCCGCTTTCTT
GCAAATTGCCCAATACCGCGCCGGCATCGTCCCAATTTCCTTCAGAAGGA
TCCCGTGTGCGAAGAAAGGAGGAATAAGGTTTACCGTCAATGGACACTCA
TACTTCAACCTGGTTTTGGTCACAAATGTCGGAGGAGCAGGAGATG
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