CB417301

Overview
NameCB417301
Unique NameCB417301
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12590 contig Csv1_Contig12590:294..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.247e-42
Identity = 73/117 (62.39%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCEN--DSKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342
            TALFN+GL+CG CY++ C+   D  WC PG S+ +TATNFCPPN  L +D+GGWCNPP  HFDMA+PA+ +I  YR GI+P+ ++R+PC KKGG+RFT+NGH YF LVL+TNVG AG
Sbjct:   74 TALFNDGLACGQCYKLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAG 190          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 1.628e-42
Identity = 74/117 (63.25%), Postives = 92/117 (78.63%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDS--KWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342
            TALFN+G SCG CY++ C+     +WC PG ++ VTATNFCPPN  L +DNGGWCNPP  HFDMA+PA+ +I  YRAGI+P+ ++R+PC KKGG+RFT+NGH YFNLVLVTNV   G
Sbjct:   90 TALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTG 206          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 2.777e-42
Identity = 73/117 (62.39%), Postives = 92/117 (78.63%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDS--KWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342
            TALFN+G SCG CY++ C+     +WC PG ++ +TATNFCPPN  L +DNGGWCNPP  HFDMA+PA+ +I  YRAGI+P+ ++R+PC KKGG+RFT+NGH YFNLVLVTNV   G
Sbjct:   92 TALFNDGASCGQCYKIACDRKRAPQWCRPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTG 208          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.737e-42
Identity = 75/117 (64.10%), Postives = 92/117 (78.63%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDSKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345
            T LF  G  CG+CYE+KC +    C  G+  ++VTATN CPPN   SNDNGGWCNPP +HFD++ PAFLQIAQ +AGIVPIS+RR+PC K GGIR+T+ G+ YFNLV+V+NVGGAGD
Sbjct:   82 TPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGD 198          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.080e-42
Identity = 74/121 (61.16%), Postives = 98/121 (80.99%), Query Frame = 1
Query:    7 LFNNGLSCGSCYEMKCEN----DSKWCLPG----SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345
            +F +GLSCG+C+E++C      D + CLP     SI+VTAT+ CP N AL  D GGWCNPPL HFD+++PAFL+IA++++GIVP+S+RR+ C +KGG+RFT+NGHSYFNLVLV+NVGGAGD
Sbjct:   72 MFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGD 192          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.378e-41
Identity = 72/117 (61.54%), Postives = 91/117 (77.78%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDS--KWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342
            TALFN+G SCG CY++ C+     +WC PG ++ +TATNFCPPN  L +DNGGWCNPP  HFDMA+PA+ +I  Y AGI+P+ ++R+PC KKGG+RFT+NGH YF LVLVTNV  AG
Sbjct:   79 TALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAG 195          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.800e-41
Identity = 72/117 (61.54%), Postives = 91/117 (77.78%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDS--KWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342
            TALFN+G SCG CY++ C+     +WC PG ++ +TATNFCPPN  L +DNGGWCNPP  HFDMA+PA+ +I  Y AGI+P+ ++R+PC KKGG+RFT+NGH YFNLVLVTNV   G
Sbjct:   74 TALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTG 190          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.070e-41
Identity = 73/117 (62.39%), Postives = 91/117 (77.78%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCEN--DSKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342
            T LFN+G SCG CY + C+   D ++C+ G S+ +TATN CPPN AL ND GGWCNPP QHFDMAEPA+L+I  Y  GIVP+ ++R+PCAK+GG+RFT+NG  YF LVLV+NVGG G
Sbjct:   74 TVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVG 190          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.070e-41
Identity = 69/114 (60.53%), Postives = 92/114 (80.70%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDSKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342
            TALFNNG  CG+CYE+ CE+  +WCLPGSI +TATNFCPP+    NDN  WCNPP +HFD+++P FL+IA+Y+AG+VP+ FRR+PCAK GG++F + G+ +F ++L  NVGGAG
Sbjct:  130 TALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFCPPDFTKPNDN--WCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAG 241          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.070e-41
Identity = 72/118 (61.02%), Postives = 94/118 (79.66%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDS--KWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345
            TALFN+G SCG CY++ C+     +WCL G SI +TATNFCPPN A ++DNGGWCNPP  HFDMA+PAFL IA+Y+AGIVPI ++++ C + GG+RFT+NG +YF LVL++NV G G+
Sbjct:   68 TALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGE 185          
The following BLAST results are available for this feature:
BLAST of CB417301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EXP13_ORYSJ1.247e-4262.39Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ1.628e-4263.25Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ2.777e-4262.39Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ4.737e-4264.10Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ORYSJ8.080e-4261.16Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ORYSJ1.378e-4161.54Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ1.800e-4161.54Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA1_ORYSJ3.070e-4162.39Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP24_ARATH3.070e-4160.53Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP17_ARATH3.070e-4161.02Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]

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Properties
Property NameValue
Genbank descriptionEST0376 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P021 similar to expansin (acc# AAC33530), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417301 ID=CB417301; Name=CB417301; organism=Citrus sinensis; type=EST; length=346bp
ACCGCTCTATTCAACAATGGCCTAAGCTGTGGTTCATGCTATGAAATGAA
ATGTGAAAATGACTCCAAGTGGTGCCTCCCCGGCTCCATCATTGTCACCG
CCACCAACTTCTGCCCACCTAACCTTGCCCTGTCTAACGACAACGGCGGT
TGGTGCAATCCTCCCCTCCAGCACTTTGACATGGCTGAGCCCGCTTTCTT
GCAAATTGCCCAATACCGCGCCGGCATCGTCCCAATTTCCTTCAGAAGGA
TCCCGTGTGCGAAGAAAGGAGGAATAAGGTTTACCGTCAATGGACACTCA
TACTTCAACCTGGTTTTGGTCACAAATGTCGGAGGAGCAGGAGATG
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