CB417301

Overview
NameCB417301
Unique NameCB417301
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12590 contig Csv1_Contig12590:294..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 1.167e-40
Identity = 70/117 (59.83%), Postives = 94/117 (80.34%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCE-NDSKWCLPG--SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342
            +ALFN+G  CG+CY + C+ + +KWC PG  SI +TATN CPPN AL +++GGWCNPP QHFDM++PA+  IA Y+AGIVP++++R+PC + GGIRF ++GH YF LV VTNVGG+G
Sbjct:   68 SALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSG 184          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.524e-40
Identity = 69/116 (59.48%), Postives = 95/116 (81.90%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCE-NDSKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342
            +ALFN+G +CG CY++ C+ ++SKWC  G S+ +TATN CPP+ +  +++GGWCNPP QHFDMA+PA+ QI  YR GIVP++F+R+ C +KGG+RFT+NG+SYF LVL+TNVGG G
Sbjct:   64 SALFNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPG 179          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 1.990e-40
Identity = 73/117 (62.39%), Postives = 90/117 (76.92%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCEN--DSKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342
            TALF++G SCG CY + C+   D +WC  G S+ VTATNFCPPN AL +D+GGWCNPP  HFDMA+PA+ +I  YR GIVP++FRR+PC ++GG+RFTV G  YF LVLVTNV  AG
Sbjct:   74 TALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAG 190          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 3.395e-40
Identity = 68/117 (58.12%), Postives = 95/117 (81.20%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDS--KWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342
            +ALFN+G SCG CY++ C++ +  +WCL G ++ +T TN CPPN ALS+++GGWCNPP  HFDMAEPA+LQI  Y+AGIVP+ ++R+PC K+GG+RFT+ G +YF LVL++NV G+G
Sbjct:   72 SALFNDGASCGQCYQIACDHQAEPRWCLQGRTVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSG 188          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.877e-40
Identity = 71/116 (61.21%), Postives = 92/116 (79.31%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDSKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345
            TALF+ GLSCG+C+E+ C ND +WC+ G SI+VTATNFCPP        GG C+PP  HFD+++P + +IA Y++GI+P+ +RR+ C + GGIRFT+NGHSYFNLVLVTNVGGAGD
Sbjct:   78 TALFDQGLSCGACFELMCVNDPQWCIKGRSIVVTATNFCPP--------GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGD 185          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 1.685e-39
Identity = 67/115 (58.26%), Postives = 89/115 (77.39%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDSKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345
            TALFN G +CG+CY++ C ND +WCLPGS+ +TATNFCPP+   S   G WCNPP +HFD++ P FL+IAQY+AG+VP+ +RRI CA+ GG++F   G+ YF ++L  NVGGAGD
Sbjct:   88 TALFNEGYTCGACYQIMCVNDPQWCLPGSVKITATNFCPPDY--SKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGD 200          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.200e-39
Identity = 70/116 (60.34%), Postives = 90/116 (77.59%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCE-NDSKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAG 342
            +ALFN+G  CG+CY + C+ + S WC PG SI +TATN CPPN A  +D GGWCNPP +HFDM++PA+  IA Y+AGIVP++F+R+PC K GGIRFT++G  YF LV V NVGG+G
Sbjct:   63 SALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSG 178          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 8.362e-39
Identity = 66/115 (57.39%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDSKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345
            TALFN+G +CG+CYE+ C  D +WCLPGS+ +TATNFCP N + + D   WCNPP +HFD++   FL+IA+Y+AG+VP+ +RRIPC+K GG++F   G+ YF +VL+ NVGGAGD
Sbjct:   98 TALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGD 210          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 8.362e-39
Identity = 66/115 (57.39%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDSKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345
            TALFN+G +CG+CYE+ C  D +WCLPGS+ +TATNFCP N + + D   WCNPP +HFD++   FL+IA+Y+AG+VP+ +RRIPC+K GG++F   G+ YF +VL+ NVGGAGD
Sbjct:   92 TALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGD 204          
BLAST of CB417301 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 1.092e-38
Identity = 66/115 (57.39%), Postives = 89/115 (77.39%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDSKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGD 345
            TALFN G +CG+CY++ C +D +WCLPG+I +TATNFCPP+   S   G WCNPP +HFD++ P FL+IAQY+AG+VP+ +RRI CA+ GG++F   G+ YF ++L  NVGGAGD
Sbjct:   95 TALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFCPPDY--SKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGD 207          
The following BLAST results are available for this feature:
BLAST of CB417301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EXPA3_ORYSJ1.167e-4059.83Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP12_ORYSJ1.524e-4059.48Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ1.990e-4062.39Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ORYSJ3.395e-4058.12Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA5_ARATH9.877e-4061.21Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXP23_ARATH1.685e-3958.26Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP33_ORYSJ2.200e-3960.34Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ARATH8.362e-3957.39Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ARATH8.362e-3957.39Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP25_ARATH1.092e-3857.39Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]

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Properties
Property NameValue
Genbank descriptionEST0376 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P021 similar to expansin (acc# AAC33530), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417301 ID=CB417301; Name=CB417301; organism=Citrus sinensis; type=EST; length=346bp
ACCGCTCTATTCAACAATGGCCTAAGCTGTGGTTCATGCTATGAAATGAA
ATGTGAAAATGACTCCAAGTGGTGCCTCCCCGGCTCCATCATTGTCACCG
CCACCAACTTCTGCCCACCTAACCTTGCCCTGTCTAACGACAACGGCGGT
TGGTGCAATCCTCCCCTCCAGCACTTTGACATGGCTGAGCCCGCTTTCTT
GCAAATTGCCCAATACCGCGCCGGCATCGTCCCAATTTCCTTCAGAAGGA
TCCCGTGTGCGAAGAAAGGAGGAATAAGGTTTACCGTCAATGGACACTCA
TACTTCAACCTGGTTTTGGTCACAAATGTCGGAGGAGCAGGAGATG
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